RNA id: TU415147


Basic Information

Item Value
RNA id TU415147
length 212
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G365194
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9846192 ~ 9846403 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacatagacacactggctttactcaaggccAGTGAAATGAccttagtaaagattgaaaaaaagtaaggggcctagacagctgccctggggaatttctgattctacctggattatgttggagaggcttccattaaagaacaccctctgtgttctgttagacaggtgactctttatccacaatatagcagggtgtgaaaagccataacatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415143 lncRNA upstream 5233 9840575 ~ 9840959 (+) True G365190
TU415129 lncRNA upstream 12048 9828490 ~ 9834144 (+) True ca9
TU415124 lncRNA upstream 43357 9802618 ~ 9802835 (+) True G365175
TU415025 lncRNA upstream 70615 9774865 ~ 9775577 (+) True G365077
TU415042 lncRNA upstream 159230 9635188 ~ 9686962 (+) True G365093
TU415148 lncRNA downstream 471 9846874 ~ 9847079 (+) True G365195
TU415149 lncRNA downstream 1677 9848080 ~ 9848292 (+) True G365196
TU415166 lncRNA downstream 4740 9851143 ~ 9851352 (+) True G365202
TU415170 lncRNA downstream 8343 9854746 ~ 9858120 (+) True G365205
TU415190 lncRNA downstream 24465 9870868 ~ 9871159 (+) True G365218
XM_036976728.1 mRNA upstream 12019 9810724 ~ 9834173 (+) False ca9
XM_036976726.1 mRNA upstream 12021 9810725 ~ 9834171 (+) False ca9
XM_036976725.1 mRNA upstream 48369 9782455 ~ 9797823 (+) False dcp2
XM_036976724.1 mRNA upstream 48369 9782457 ~ 9797823 (+) True dcp2
XR_005051972.1 mRNA upstream 120627 9725438 ~ 9725565 (+) True LOC118964779
XM_036976730.1 mRNA downstream 24224 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA downstream 24225 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA downstream 24228 9870631 ~ 9874229 (+) True LOC110523166
XM_036976746.1 mRNA downstream 262469 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 262469 10108872 ~ 10124536 (+) False LOC110523169
TU414760 other upstream 616961 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1000076 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1926627 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2153678 7690440 ~ 7692514 (+) True G362554
TU411798 other upstream 2656373 7186030 ~ 7189819 (+) True G362297
TU415150 other downstream 2300 9848703 ~ 9849154 (+) True G365197
TU416883 other downstream 1130279 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1579239 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2031926 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3262293 13108696 ~ 13109134 (+) True G368440

Expression Profile