RNA id: TU415170


Basic Information

Item Value
RNA id TU415170
length 3270
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G365205
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9854746 ~ 9858120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATTTGGCAGATTTATTGATACATTCTTTATACCATTATAGGATCATAATAGTTAATTGATCAAAATCCCTATAAGCATCAATGATGAGGAATTCACATGCAAAGATGGATTGGTGGCTTAGGTAATCAAATAGGAAGTAGTATAATCAGAATTAAATACAGAATTTTGGAAATTGAGTCAACTCAGACAATACAACAAGACAAGACATTTTGGTATCGAGCAAACATTCTCCCTCATTCTTCGGAGGTAGATTCCCAGTTTCTGCCTTCCCAACATGTTATCAGCACAAAACAATGACAGCGAATGTGCTGGAATTCCAACAACATGAAATAAGCAACATTCGATGAAATCCATCTCCTGACAATCCGCTCGGTGTGACTTAGCAATTGTTGGGGACCCATGGTCCACTAACACTCCTACACAGACGTGAGTAAGACCACCGTATACAACACAAATAAAACATACATGGAAACATCATTGGAAAGATTGTGGCGGCGTATGCCACGTGTCAGGGATTTTAAAAACCGTTGTAGATGTGCACAATCTTAGGAGTGCTGGATCGCCCAGTGGGATTTGTCCACAATGtgagtgctggtgtgtgtgtggtcacttcAGTGTGACTTCACAACGAGGTAGCGCTGCCATCTCTCAGCGTAGTCAGGAACACGGTTCTTGATTTACACTACGTCCCAAacgtcaccctattccctttgtagtgcactacttatgaccagggcccataaggatctagccataagtagtgcactacctggGAACAGGGTGATGTTTGGGGCACAAACTGTATTGCAGGCTTGTTTGAGCTGGTGCCTGGCGGTTGGCAATGGTTTCTGGCTGAACAATGGTTCACCAACCAAACTAcgcaaagaaaataaaaaagaccTTGGCACCTCTCCATTGCTCGACTGATAAACAAGTCTACCAAACCATTAAccttttgccccccccccctccccccagtatTAAGAGAGCACCCGTCAATCACACTTACAACACGGGTACATATGCAGAAAGCAAGCcatcaaaaaatacattttaaaaaaagaagaaaactACAATAATGAAATCAATGGAGGACCTGCATTGACGTGGCTGTATATGTCAGAAAACCCTGCCGTCCATCAATAGTTCTTGAAATGATATATTAGAAAACCCTGTCGTCCATCAACTGTGGAGACTTTAATGTATTGGGGTGAGCCGAGCCCATCTCAACTCTTTCATTAGGAAAGCTGGTGAAATTATGGGTTTAAATGGAGTAACTGGCCAATTGGGGATCCTAACTAACTCGAGCCATTCAAAATGGCAACATCGAGACTAATTCCCTTTGGAACCGTGCTTGAAAAGACAGTTAGTGTGAAAAGAAAATACCAGAGCGAAGGCTTTTTTTTagtacaattttttattttatttttttacccctttttctccccaatttcgtggtatccaattgtttagtagctactatcttccggaagccagccgcaccaatgtgtcggaagaaacacagtgcacctggcaaccttggtttagcgcgcactgcgcccagcccgccacaggagtcgctggtgcgcgatgagacaaggatttccttaccggccaaaccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaacccagagtctctggtggcacatttGGTATCTGTACTGCAGCGCaattaaccactgcgccacccgggaggccctgaaaGGCTATTTTTAAGCAAAAAGGCACaaggggggtgtggtatatggccaatatatggtatatggccaatatatggtgtatggccaatatatggtatatggccaatataccacagctaaggggtGTTCTTAGGCACCACGCAAAGCAGAgcccatataccacaaacccccgaggtgctttattgctattataaactggtaatCAAAGTAATTAGaggagtaaaaatacatgttttgtcatacccgtggctgtcggccaatcagcattcatgcctcgaaccacccagtttataaaacgCTGTATGCAACAAGCTGTCGTCTTAACAAGTATTGTCCAAGACACTTGGCCAAGCAGCTTTTgtggtaaaatacaaaaaaaggtcAATTTACAAGGGTCAATCAAATCGCAGGTTTTAGACAACTCAGCTTTTAAAGGCAACGTTCCCGCTGTTCGCAGAGATCGCATTCATGGTAAACACTGCATGTTGGCTCAAACAGAAATTGCCTTTAAAAGCCACCAGGGCCTATATGGTGCTGATCTGAGATCAGGTCTTCCCTGTCCATATAATCCTATTCATTATGATCCAAaagacaaaactgatcctagatcagcagaagtcctactctgagacactttgtgatgACCcagaggtttaaaaaaaaaaagaagatacaAAACTCTATGGTATTGCTGCCGATGGTAGTAATAATTATTTTTACTCTATAACCACTCAGTTGTAGAGTAAAAAAGGCCACCGTTTAGTGACTGACCATAACACTATTAGAGTACggtcatattcattagtgcacaccgtagaaaaacgttttgcaacaaaaaCGAGTTTCTTATTGGTTCAGGTAGTCCCGCATCGTTTAGTGTCTAGTGAATATGATTCCGTCGTCTTTTTCACCTGTATTTGGTGGATCAAGGTCAAGAACATTAGCATTTTATTTgcataataaaaacataaaaatacCTTACATAATATGTACCAGtgggggctgctgaggggaggatggctcatattGTCTGGAATGGAGCtaaatggaacggcatcaaacatTTAGTTTGATGTATCTGAAAACATTCCACTGATTCAGCGTTAGCCATTACCACtagcccgtcctccccaaataaggtgccaccaacctcctgtgatgtgtaCATGTGTCCTACACATGGCAGTGTCTGCCAGGGCAGATAATGCATAATATAGTGATGTTGCATACCgttgtatgtgtgtataataGGGTTTTCCAAACTAGGGGATTTGAAAATGGGAGTCACGATCGATAATTGGTGATTGGTTCATAGAACCTGGCTTAAAATCAGTTTTCTTCCAAGGTTCTTTTCTACACAGATCATCATACATTATTGCCTGATGATCTTCTGCATTTCCTAATACATTTCAGTCAATTCAAACCATATGGTTTTCAGATTAAAATACAGTCAAAAatactgtcagactgatttgtaaGACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415166 lncRNA upstream 3394 9851143 ~ 9851352 (+) True G365202
TU415149 lncRNA upstream 6454 9848080 ~ 9848292 (+) True G365196
TU415148 lncRNA upstream 7667 9846874 ~ 9847079 (+) True G365195
TU415147 lncRNA upstream 8343 9846192 ~ 9846403 (+) True G365194
TU415143 lncRNA upstream 13787 9840575 ~ 9840959 (+) True G365190
TU415190 lncRNA downstream 12748 9870868 ~ 9871159 (+) True G365218
TU415195 lncRNA downstream 20411 9878531 ~ 9878767 (+) True G365223
TU415160 lncRNA downstream 21142 9879262 ~ 9881261 (+) True G365199
TU415153 lncRNA downstream 27194 9885314 ~ 9891393 (+) False G365198
TU415159 lncRNA downstream 27194 9885314 ~ 9911145 (+) False G365198
XM_036976728.1 mRNA upstream 20573 9810724 ~ 9834173 (+) False ca9
XM_036976726.1 mRNA upstream 20575 9810725 ~ 9834171 (+) False ca9
XM_036976725.1 mRNA upstream 56923 9782455 ~ 9797823 (+) False dcp2
XM_036976724.1 mRNA upstream 56923 9782457 ~ 9797823 (+) True dcp2
XR_005051972.1 mRNA upstream 129181 9725438 ~ 9725565 (+) True LOC118964779
XM_036976730.1 mRNA downstream 12507 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA downstream 12508 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA downstream 12511 9870631 ~ 9874229 (+) True LOC110523166
XM_036976746.1 mRNA downstream 250752 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 250752 10108872 ~ 10124536 (+) False LOC110523169
TU415150 other upstream 5592 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 625515 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1008630 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1935181 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2162232 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 1118562 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1567522 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 2020209 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3250576 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3907127 13765247 ~ 13769296 (+) True G369763

Expression Profile