RNA id: TU416171


Basic Information

Item Value
RNA id TU416171
length 226
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G366107
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9870418 ~ 9870643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcggttgtcgtcgccggtctactagctgccactgatttctttcctccccctccttataaGTTTATTGGTCATTTGTCAACCGACCCGCTGACTAATGAGATCTGATTATGAGTTCATTATGAGTGTCTGTGTCAGAGATCTGCTGCTCTCACACTGAGAAGGGGAAGTTTGGGAAAGCTCCTTTTCACCCAAACATAATTATAAATGTGCAACTTGCACATTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416160 lncRNA downstream 20633 9849459 ~ 9849785 (-) True G366097
TU416140 lncRNA downstream 58916 9810924 ~ 9811502 (-) True G366077
TU416103 lncRNA downstream 113703 9755440 ~ 9756715 (-) True LOC110522838
TU416080 lncRNA downstream 147505 9721692 ~ 9722913 (-) False G366019
TU416187 lncRNA upstream 47292 9917935 ~ 9918310 (-) True G366123
TU416188 lncRNA upstream 48199 9918842 ~ 9920142 (-) True G366124
TU416206 lncRNA upstream 100319 9970962 ~ 9971551 (-) True G366140
TU416271 lncRNA upstream 233367 10104010 ~ 10156606 (-) True G366199
TU416295 lncRNA upstream 252880 10123523 ~ 10124464 (-) True G366215
XM_021601607.2 mRNA downstream 1207 9857567 ~ 9869211 (-) True zgc:114200
NM_001165180.1 mRNA downstream 94861 9762915 ~ 9775557 (-) True reep5
XR_002473370.2 mRNA downstream 113433 9755287 ~ 9756985 (-) False LOC110522838
XR_005051937.1 mRNA downstream 245679 9623770 ~ 9624739 (-) True LOC118964744
XM_036976720.1 mRNA downstream 259868 9454461 ~ 9610550 (-) True pam
XM_021601617.2 mRNA upstream 8606 9879249 ~ 9899368 (-) False tpm2
XM_021601619.2 mRNA upstream 8606 9879249 ~ 9899369 (-) False tpm2
XM_021601612.2 mRNA upstream 8606 9879249 ~ 9911220 (-) False tpm2
XM_021601615.2 mRNA upstream 8606 9879249 ~ 9911220 (-) False tpm2
XM_036976732.1 mRNA upstream 8606 9879249 ~ 9911220 (-) False tpm2
TU415770 other downstream 680320 9189669 ~ 9190098 (-) True G365752
TU414654 other downstream 819710 9047542 ~ 9050708 (-) False G364754
TU414159 other downstream 1566235 8303267 ~ 8304183 (-) True G364322
TU413195 other downstream 3144438 6602005 ~ 6725980 (-) True LOC110524941
TU413188 other downstream 3318744 6543675 ~ 6551674 (-) True G363470
TU418958 other upstream 2263409 12134052 ~ 12136790 (-) True G368612
TU419308 other upstream 2834923 12705566 ~ 12706092 (-) False G368921
TU419309 other upstream 2834923 12705566 ~ 12706092 (-) True G368921
TU420894 other upstream 4336547 14207190 ~ 14208705 (-) True G370333
TU421214 other upstream 4556695 14427338 ~ 14428591 (-) True G370635

Expression Profile