RNA id: TU415160


Basic Information

Item Value
RNA id TU415160
length 1969
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G365199
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9879262 ~ 9881261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTGCTGGCCATTTTTAATCATCTTAAGAGCTTATACAGTTGATTCATTGCATAGGATACATACATGAGTAATAAACCTTAATACAATTATTTTAATACCTCCAGAATATTGAATAATTCCATCCAATTAAAACCTTCAGACCGATAAGCATTCTGACTAGACTGAAGTATTGACACAGGTGCATTAAGATATTACATGAGCTTGAAATCAACCAAACAAGTTAACAGCTGTAGGGTAGTTCCACAAAATGAGTCCCTTTGATATTTGAAGTAGAAATGTTGCACCAATATTGGATTTTAAAAGCCTGccatattaaatgaagtgccatTTAATATAGACATGGACAATTCAATacatgatatttttttttaaatatatcaaTAAAAGAGTTAGTGCCAacattcagcattttgacatgtccctctgcAATCAGACTTCTCAGATTTGAACTCACTTAACCTCAAAAGTAAATTTGGCTGTTTTGACAATGTCAATTTGGAAGATTATCTATTTCATGTGATTTGTGAGTCATTGCAAGGTAACACTTAAAcatgtccctcattttaaggtcaatcCTGTAACCTGAACTGAACTTTTGTTTTAATATGGCAAATATTTAATATCCCCCACCCAAAAAAGAAAAATTTAACATCTAATAATCAAATCAGTGTAAAAAGCaagtgagctggttctactctttctGGCCATTTTGTGGTGTTTTGTGGGGGGAAACATTGGGTTGAGCACAGGGCCAGCCCTGGTTGAGCAAGTAGTTACACTACTCAAAAAGAGACTCGTTTCGTGGAACAACCATGTAACAGTTAAACCCGGACAATTATTGAGAGGGTGTTTCAAAAAATTAAGAGATGTTTCAGATTCTAACAACTATGGGCATTCTCAAATCTTTGTCaaggaaaaaaaaaaaggcaAGTGATTAGAATACATGAGGTACCACATCATCATGATTAGAATACATGAGGTACCACATCATCATGATTAGAATACCAAAATCTCTAATATTAAAGACTACTTTCCAAACCCCCAAAAGGTCACTACAACAATTTAGAAAATTCAAAAACTTTGTCAAAAGAATCCTGTGGCGAAATTAAATGTCCCTATTGTATTTAGTTTGTATTACATTATTTGATACCTTTGCTAGTCATTTTGAACCATAGAAAACTAACCTAGACGTAGATTTAACAAACTGCTATCCTAAATAGTCCAAATATTAAAATGTGAACGCTAGTCTTTTTCCCTGTTTGGGTCAGTTCTACTCAAATACTATACTCTATTAATTAAAACAATGAGTGGCACATCTTACCAAACAGTACGTAAAGAATATGTTTACCATTTATTTGTTTTGAAGGTTTACAAAAACTTTATATtttggattaaaaaaaataagagtTTGAGGTAACAGAGCTTAAAGAGTAAAGCAAATGCAATTTCACTTCAAGGAGGCCTCAGAGGTCAGATTAGAAAAGAGATGTCAACTTTAAGACTTGAATCACATGCTAAATACAAACAGCAACCTCGATAGCATTCAACTCTATGCTGTTCTGCTGTTATACTGAACCATGTTAACTTCTGTAGCCAGCATGCGTTTGCCATTAACTAGCATGTGTGCAAGAGACCCTCATTAACTAAACGGAATGCCTTGTTCGTAAGCCTTTACTACTATTAAAGCCAAGTGAAGACTGTCCTGTTCCCAAAGGGGCAAGTCAACTAAAGGATTTGGTCAAGTGTGTATCAATGAGCATTATGAAAGCTTTGTGTTTTAGGCCTCTTGTTCATGGGCCACGACAGACAGAGCTCTCTTTATAGATTGTTGAGCTCCaggagggtttggtccagcgtTTGGTGCATGTCTAGGTTCTCTTCTTTAGCCGTAGCCAGTTTCTCTGAAGACGGGAAAACACAAAGAACAGGTGAGCACCCCAACAAGCTCTGTTGGCTCAGGAATAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415195 lncRNA upstream 495 9878531 ~ 9878767 (+) True G365223
TU415190 lncRNA upstream 8103 9870868 ~ 9871159 (+) True G365218
TU415170 lncRNA upstream 21142 9854746 ~ 9858120 (+) True G365205
TU415166 lncRNA upstream 27910 9851143 ~ 9851352 (+) True G365202
TU415149 lncRNA upstream 30970 9848080 ~ 9848292 (+) True G365196
TU415153 lncRNA downstream 4053 9885314 ~ 9891393 (+) False G365198
TU415159 lncRNA downstream 4053 9885314 ~ 9911145 (+) False G365198
TU415158 lncRNA downstream 7212 9888473 ~ 9891393 (+) True G365198
TU415205 lncRNA downstream 30124 9911385 ~ 9911700 (+) True G365233
TU415210 lncRNA downstream 30760 9912021 ~ 9913862 (+) True G365235
XM_036976730.1 mRNA upstream 5033 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA upstream 5033 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA upstream 5033 9870631 ~ 9874229 (+) True LOC110523166
XM_036976728.1 mRNA upstream 45089 9810724 ~ 9834173 (+) False ca9
XM_036976746.1 mRNA downstream 227611 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 227611 10108872 ~ 10124536 (+) False LOC110523169
XM_036976750.1 mRNA downstream 381444 10262705 ~ 10281350 (+) True ankrd55
NM_001281326.1 mRNA downstream 401739 10283000 ~ 10300246 (+) True gp130
XM_036976752.1 mRNA downstream 459971 10341232 ~ 10366701 (+) True slc38a9
TU415150 other upstream 30108 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 650031 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1033146 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1959697 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2186748 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 1095421 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1544381 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1997068 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3227435 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3883986 13765247 ~ 13769296 (+) True G369763

Expression Profile