RNA id: TU415153


Basic Information

Item Value
RNA id TU415153
length 2830
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G365198
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 9885314 ~ 9911145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGGTTTCAGGACATTTATTACAGAGAAAGGGAAAACAGGGGACAAGTATATATCTCAATACAGAAGACCAAACCTAACCCAGATCTTTGGAGAGGTATGGACACTGTGCCAGACAACACGACTGGGTGTGGGTTTTCCTATATACATCTATAGAAATGTAAGAGGATCACTGAACAATGCTGACACCTGACACAACAGTAGGGAGCGGAACTAAAAGGGGGAATGGGTTTgacgggggtggggggggggcaatctGCCTGGGGCCACATTTATATCCCTTGGTATTTTGAATCGGCAAGTCTTGTAAACTTAGATACGACCACATTTTTTTTCAAATTCGCCATACAAATTTCGGAACCAAGGGTATTGAGAGATAGATCACAGTTCTGTCTGAAAAGTTGTGGAATGAAAAAAAGGACAGAAAGGAAGTGAAGGAAGTCTGAACCCCAGGGGTGCCAGATGAAGGTGGAGagtgtcagaggaggaggaggaggaagagtgaggGAGTGTCTAGAGAGTAGTCATGTCGTTGAGAGCCAGGTCAAGCTCCTCACTGAGGGCTTTACCCTTCAGCTTCTGAGCGTACACCTCgtcTCCAAATCATCAATGGTTTTCTCCAGCTTAGCCACAGACCTCTCTGCAAACTCAGCACGGGTCTCAGCCTGGGGGTGGGGGAAGCATCTGAGCACAATGCTTTTCAAATAAATTTTTTCCAAGCACCAAATGACATACGTAATATCTTGGTTAACATTAGGTTGCATAAGAGTGGGAGGAAGATAAGAGGCTTTAAGATACCATTTGAACAACCATTCATACTAAAATATTAGATATGGTGACCCTACAGTACCCACCTCTTTAAGCTTGTCGGTAAGAACTTTGATTTCCTCTTCATATTTGTCCTCCTTTTGTGAGTACTAGAAGTGAAATAATGGGGATTCATATTAGCACAAGAGCTATGACGAGAGCTTCTCCTTAAACATTCACAACTTAAAATATATGGCAGTATTCTAGTTGAAATATAGACAGTCAATATACATTTATGTATTTATTCTATGACAACGTCTACAGTGTAGCATTCAATTAATAGCCTACTGTTCACATCCACTAAAGTAAACGCTATTGGATAAAGATTCCATTAATGAAAATGAGGAGGGCTACAACAAGAGCTGAGCTGACAGGTTGGCTAGGGAAAGAAGACTAACGACACAAGAGCTGAAAGGTTggctagggaggagaggagactgcaACACGAGAGCTGAAAGGTTGGCTAGGGAGAGGAGGGCTAAAACGCAAGAGCTGAAAGGTTGGCTAGGAAAACAAAGCTAAGAGGGCTAGCTAAAGTCTCAGCGTAGGCTTGTCATAATGCAAGCGGGTCCTAAGAACAAACCATCAAACTCTCCTCAATCATAATCTTCTGCTTTCGAATGTATTTTACACCCATCTAACGTAATGCCTGGACTACAGTTCAATTCCTACACTTTTTAAAATCAATGTTATGGATTTAAAAAAGTATATAGATAACTTTATAGATGCTGCACTGCTTGAGAGGATGGCTTGTGTGTAACTATTTAATTTGACACTATGCTGTATTctgtgcatatgacaaataaacatGGATTATAGCTAGATATCCTACACTAAGACTGTGTGTTGAGGggcatctgtgtgtgttttatccaGCTGGACTATCCTGCATCGTATCTGACCTTCGGGCCCAGCTTACTTCCCCTCTCCTACAGTACCTTCTCAGCCTGGGCCTCCAGAGACTTCAAGTTGTTGGTGACATTTTTCAACTCTTCCTCAAGATCACCAGATTTACTGTGCAacagcaggagggagggaggaaaatgagggaaaagaaaggagagagagagcgttttgagagggaggagaggacacgaCCAAGGAGACCCTGGTCTGGATACTCCAACCCAGTGCCTATTAGGGAGAGTGCGTTGGCTGGATAATAAAACCTACCTGAAGGGGTTAATGACACACTTACCTGAAGGGGTTAATGTCACCTACCCATCAGATGGGAGGGTTAAATCAGGATCCTTGATGGATAATATCTGATAGATAAAATCATATACTCTAAGTATAGGAAATATACAAACACATGTATAAAATCCATACTTGTATAATCTGTATGCCTCAATCTCAAGTATCACATCAAGGATCCCATTGGCTTCAGGTTGAAGATATGGCAAGGGACAGTATGGCTTGTAGGACATTGGTCCTTTTGTACCACAGCAATACTGTCACGTCAACCACCAGGGGAGGCCTCCATGGAGCACAGCTGCTAGGCAGAGAGGCTTGGAGGGACGAGTCAAGGGCATAAGCcagaggagcggaggagaggagcggaggagaggagaaaggaagcaGGTAGTAAAGCAGTTTGGAACCGGGACGtttgtcctggtatgggggggggggggggggggcagacagtaCCTCATCCTCTCCGCACATCATGGACTTCAAATTCTGGTCCATGAGTCTAAGCTCTTCCTCCAGCTCCCTGACTCGACTGGGTTAGTCCACAGTCAGGTAGGTAGAGCGGGGTGTAGGAAGTGGGGGCAGGAGGGGTCAGGGAACCCACACACACAAGGTGATCCCAGGTGGaggggtgttggtggtgttgGATTCAGGCATGCATTACATAAAACACaggggagagaacacacacatccaGGTGCCTGTTGTGGTTAGTGTATCCCATCGTCTCGTCTCCCACGTGGGTTAGTTTCCCAcatattcttttttttatttttattttttctccccaattgttagtagctactatcttgtctcatcgctacaactcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415160 lncRNA upstream 4053 9879262 ~ 9881261 (+) True G365199
TU415195 lncRNA upstream 6547 9878531 ~ 9878767 (+) True G365223
TU415190 lncRNA upstream 14155 9870868 ~ 9871159 (+) True G365218
TU415170 lncRNA upstream 27194 9854746 ~ 9858120 (+) True G365205
TU415166 lncRNA upstream 33962 9851143 ~ 9851352 (+) True G365202
TU415205 lncRNA downstream 19992 9911385 ~ 9911700 (+) True G365233
TU415210 lncRNA downstream 20628 9912021 ~ 9913862 (+) True G365235
TU415208 lncRNA downstream 177506 10068899 ~ 10080813 (+) False G365234
TU415209 lncRNA downstream 177506 10068899 ~ 10591997 (+) True G365234
TU415286 lncRNA downstream 212595 10103988 ~ 10156606 (+) True G365304
XM_036976730.1 mRNA upstream 11085 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA upstream 11085 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA upstream 11085 9870631 ~ 9874229 (+) True LOC110523166
XM_036976728.1 mRNA upstream 51141 9810724 ~ 9834173 (+) False ca9
XM_036976746.1 mRNA downstream 217479 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 217479 10108872 ~ 10124536 (+) False LOC110523169
XM_036976750.1 mRNA downstream 371312 10262705 ~ 10281350 (+) True ankrd55
NM_001281326.1 mRNA downstream 391607 10283000 ~ 10300246 (+) True gp130
XM_036976752.1 mRNA downstream 449839 10341232 ~ 10366701 (+) True slc38a9
TU415150 other upstream 36160 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 656083 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1039198 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 1965749 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2192800 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 1085289 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1534249 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1986936 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3217303 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3873854 13765247 ~ 13769296 (+) True G369763

Expression Profile