RNA id: TU415208


Basic Information

Item Value
RNA id TU415208
length 2179
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G365234
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10068899 ~ 10591997 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCAGTTCATCTCTTAATACATCTCTACATTGTTATTACATCATCTCTATACAGATCGTTGCTATAAAAGAGACACTTGATCAGACGCCAATTTATTTATATCTACAAATATAAATAATCTTAGTTAGTACTATACATTACCcaccaattttttttatttttattatctgATCTCAGAGAAACAATGTAAACATCAGCCATACACAGATATAAACAGAGGCAACTTATCTTGGCTGTTAAAAAATCTGTACATTATCATGGGTAtagctattttctacatttagtACATGCTTATTGTAAGGCTTCTCAAACTTGAGAGATTGGAAATGGACTACAACTCTGTCGCCCAACGCTGCAGAGGAAATGCAAAACAGTTAATGTGAAAGAAaaaataagtatgcccccaacTCTGTTCGCTTTAAGGCTGATGTTTGCAGGTATTTCTGCCTGAGCATTTTCTGCCTGTGTCAAGATTTGGTTTCTTTACAGTCTATAACTAGTCCTATCCCTGTCAGTGTtaagaaaaataataaaaaataacaaataaaaatcgTTTGAGACCTCGGAGAAAACACAACCCTTTCAGGCCAGCATCTAGTCCCTTAAGTCTAGTAAGGAAAGACATGTTGTAGAGACACAGAATTTGACTTTCTTCAACACACTACATTAAAACAATAACTTGTTGGACATATGTCTTTTAAAACTGATTTAAAAGTTTCTGCACGGAGACTAAATTGACCATGTCAATTGACGTAATTCCAGGAAATAGATTTATCTGCTGAAatgttttccccaaaaaaatatttaagGACAAACAAGAACTCAAACAAAATGTTATTTTACATATTGTATAGATTATCAGAGCCTGGTGAGAATTAAAGCTCTGATAAAACGGCATGCTCAATTGAGGCATTTCACCGTTTTAGTCTGTAGTGCAATCACCGCCGCGGGAAACATTGATCACATGATTTAAACATGTTGAATtgttgctcagttggtagggcaaagagcttgcaacgccagggttgtgggtttcgattcccacaggggacttGTACAAAACAATATGaacatgtatgcactcactactgtaagtgtctctggataagagcatctgctaaattacttaaaTGTAACTCAGACCGTTCAGTCCCTCTTCCCTGATATTTGTCCATGGTGGTATAACAAAGAGTCCTAAGAGAAAACTAATTCTGACTATTAGTAGTGTAGCGGTTAAGAATATTGGgcaagtaactgaaaggtcgctggttcgaattccCCAGCCGAGtaggtgaaacatctgttgatgtgcccttgagcaaggtacttaaccctaattgctccagggttgcaGTCAATAACGCCTGATCCCTGgacgtgaccccactctccgagggtatctcaagggggagttgggatatgcaaaaaactcatttccaattcacacgtgTGAAATAAGATAAATATAAGCGCCCACATAATTATTATGTTTCCCCTACATAGCAAACAGAAGTATTCTGAAATCGGTCAAACTTAAGGTATAGTAGGGGTGTAGCTGCTTTGTACAGCTCaagtcagggtagcctagtggttagagcgttggactaactgaaaggttgcaagatcgaatcccggagctgacaaggtaaaaatctgtcgttccgcccctgaacaaggcagttaacccactgttcctaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaataaataaagaatgactggatgatgataataatgataataaacaACAATGGAGCTAAAATAGCACAAGTTGGAAATGAACAGCAGTTTCTGGTTGGATTATGTTTCATGAATAAGGATGTTTATTTGGGAGACCCGTTCGCGGTTACTAAGATGGTGACAGACGAAGTGGGAAAGGTGGAGTCGGGTCAGATTGACCAGGAGTGGTATCATAGTGATTACATGTGTATTGAAAGAGCAAGAGGAAAAAGCTTTGTGGCTCTTTAAACTTTCAACGTGGAAAATTACGATTTTCAGAGTCGGGCTCGCTGGATATCGAGGCTTCATGGTTTAGGGACAACATGCTGGGGAATGTCAATTAACCTGTACTATGAGCTTATgtaaaaaaactatttcaacgTTATAAAATGTAAAACCTTTCGCCACCGGTCAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415210 lncRNA upstream 155037 9912021 ~ 9913862 (+) True G365235
TU415205 lncRNA upstream 157199 9911385 ~ 9911700 (+) True G365233
TU415159 lncRNA upstream 157754 9885314 ~ 9911145 (+) False G365198
TU415153 lncRNA upstream 177506 9885314 ~ 9891393 (+) False G365198
TU415158 lncRNA upstream 177506 9888473 ~ 9891393 (+) True G365198
TU415286 lncRNA downstream 23175 10103988 ~ 10156606 (+) True G365304
TU415221 lncRNA downstream 41104 10121917 ~ 10123171 (+) False LOC110523169
TU415220 lncRNA downstream 42712 10123525 ~ 10124470 (+) True LOC110523169
TU415294 lncRNA downstream 46761 10127574 ~ 10130183 (+) True G365310
TU415361 lncRNA downstream 172362 10253175 ~ 10253992 (+) True G365371
XM_036976730.1 mRNA upstream 194670 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA upstream 194670 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA upstream 194670 9870631 ~ 9874229 (+) True LOC110523166
XM_036976728.1 mRNA upstream 234726 9810724 ~ 9834173 (+) False ca9
XM_036976746.1 mRNA downstream 28059 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA downstream 28059 10108872 ~ 10124536 (+) False LOC110523169
XM_036976750.1 mRNA downstream 181892 10262705 ~ 10281350 (+) True ankrd55
NM_001281326.1 mRNA downstream 202187 10283000 ~ 10300246 (+) True gp130
XM_036976752.1 mRNA downstream 260419 10341232 ~ 10366701 (+) True slc38a9
TU415150 other upstream 219745 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 839668 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1222783 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2149334 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2376385 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 895869 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1344829 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1797516 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 3027883 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3684434 13765247 ~ 13769296 (+) True G369763

Expression Profile