RNA id: TU415294


Basic Information

Item Value
RNA id TU415294
length 2509
lncRNA type antisense_over
GC content 0.39
exon number 3
gene id G365310
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10127574 ~ 10130183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaactTTGGTAGAAGAGACTCTATAGGACACctgaggtagtagagactggaATAAAACAGCAAGATGTtctttacaaataaaaaaaagtacCACCAAGTgacacaggaaacaggaaacaatttcacacaaattTCAGTCCAGCTTAGATCCAAAAAAAGCACATAAGATTACATCACATCAGCATAAAATAAGACAAAATAGATAAAGACCAGCAAGCTGGCTGAGACACAGGTGGACAAGAGGATTCAGAAGGCATTAAGAGATTGGTAAGAATTATAGACATGACAAATTGAAGTAATACTGATTAGCTTTTATGAATGACAGAAACAGATTTTTCTTCCAGTATATAAAAAAGACCAGAGTGCATAACTTTAAAGCTTTTAAAAAGGCATAAGAAAAATAACCCGAAGCAGGAACCAAAAAATAAAATGGAAAAGAGTGTGGTATAAAAATACAGTCAAGTACAATCATTTTAGCTACCAAACTTCACATGTATTTACATTTAACTCTTCAAGCTTGATCAGCTTGTACTCCATGTAAAGAATAGGATTTGTTTTAAATAGATTATATTTTCtgcttcatttttattttatttgtttaattgTCTCAAACCCTTGCCATTAAGGAATTCCAGATAAAAATAGCAATTAAATGCATATTCCCCATTTAAAAAAAGGTTGACTTAGGAAACATTCCACATGTTAATTATCATCCTTTTACTTTAATGGATTAcaaccagaacaacaacaacacttgGAGTTATAGTTCATAAATTAACACCATTTAGGAACATGTTTGAGAATTCTAATCAAAGGGAGATGGTAAAACATTTGAGCAGAAAAGTCAGCCTTAAATCGGAAATATCCCTccaccaaaaataaaaaaaattgtacagcatttatattcattatatagagTATCCACAATGGAAAATAGAAGAGTCATAGAAAACCTCAgatgtacatggattttataacaatttgttttaaaaatagagccaagataaaaaataataaaaaattgaaTTGTTGAATTGTAGCGTGACATTCTACAAAGGAACAGCACCAGAAGAATGGTAGATCAATATTGAATATAGCGGTTTTGAATGTATGGACACAGCATTTAGGGCTcataaaattatttaaaaaaggcTAAAATATGTGCGATGCACATGGCTCAATTGTAACAGCGAGAGTTAAGAGACCAACAGGGTGTTTTCATTTTAACAGTGTGGTACGACATCAAAGTGTGTTTCGGAAAACTTACGCCCATACACAATAAATGTCTCAATCTCTTAAGGATAGCTTTGAATATACAATAACACCAAAAAAAGATGTTTAGATCTTTTTGGGGTgttattgtatatatatatatatatatataaaatcataACTTCATACATGGGATCTTTatctcaaaaaaataaaataataaaataacatttgagaCAATGCGGGCATCATAAGCGTTCACATTCAGCGTTATGCTAGCCAAACTAGCAATGTTTCTGTTAGATAAATCACCGCTCCCTGAAATACTTAAGTAATCTTCATGATTATTCGACTAAGCTTTATGGCCCAACAGTAAAAATGCACATCTTAAAAAGCATCTTTATAGAAATGCAGTTATGcacaaattcaattgattaaaaCAGCTTCATTATGCCTTTCTTCTACACATAGGATACtctaaaaacaaaaacagagtcgGAAACTTATGACCCGACGTTACAACATAACAGTGATAAAAACCATTTTACTCCGTCGTCTCCAGATCGCGGTTCTAAGGACTTATTTGTTGACTCACGGGGGGTTAAAATGGGAAGAGGAACTTCTCGAAACCATTGCAAAATGGCTACCAAAGTGCTAAAGGAACCATTTCTTTACCAGAACAGAGGCTTGATAAAACAGAGCAATACAGACTACAGTATACCAACATGGCACTAACTAAGAAAGCACCGTTTTCGTAGTAGAACTTTTGCGACTCGCTTTTTGCATTTTGTGCTAAGGTACAGCAGTTTGAGGCCATAGTAGTGGAACGGGAGGGTATTACCCAGGTATCCCATCCATCCCAGGCCCTCCACTCATGACTGGGGGCAGCTTGGTGTGGATGGAGGGCAGTCTGGGGTCAGGGAGGCTGGTCGGTGGTGGATGGAGGTCGGTCTAGGGTTAGGGACGCTGGTCTTGTGTTATGGAGGCTGGTCTGATTGTCAgcggtgggaggaggagagaaaagcagGCAGGCTGGCTGGGCCTTCAGTAGTAGACACTATGGGATAGGGAGGCTAGGGGACTGTGGGAGGATGTTGGGGACTGTGGGAGAATGTTGGGGACTGTGGGAGAATGTTGGGGACTGTGGGAGAATGTTGGGGACTACCAGTTGAGGCGGAAGACGGGGTGCTTGAGGAGTTCCCTGGATGGGGGCCGGTCGGCAGGCTGCAGCTCAAGGCAGCGCAGGGTGACGTCCCTCAGGCCAGGGGTCAgttggggagggatggagggcgcCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415220 lncRNA upstream 3104 10123525 ~ 10124470 (+) True LOC110523169
TU415221 lncRNA upstream 4403 10121917 ~ 10123171 (+) False LOC110523169
TU415208 lncRNA upstream 46761 10068899 ~ 10080813 (+) False G365234
TU415210 lncRNA upstream 213712 9912021 ~ 9913862 (+) True G365235
TU415205 lncRNA upstream 215874 9911385 ~ 9911700 (+) True G365233
TU415361 lncRNA downstream 122992 10253175 ~ 10253992 (+) True G365371
TU415372 lncRNA downstream 174286 10304469 ~ 10306459 (+) True G365382
TU415387 lncRNA downstream 190227 10320410 ~ 10321195 (+) True G365397
TU415419 lncRNA downstream 203574 10333757 ~ 10334427 (+) True G365422
TU415438 lncRNA downstream 232279 10362462 ~ 10363308 (+) True G365440
XM_036976746.1 mRNA upstream 3038 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA upstream 3038 10108872 ~ 10124536 (+) False LOC110523169
XM_036976730.1 mRNA upstream 253345 9870627 ~ 9874229 (+) False LOC110523166
XM_036976729.1 mRNA upstream 253345 9870628 ~ 9874229 (+) False LOC110523166
XM_021601608.2 mRNA upstream 253345 9870631 ~ 9874229 (+) True LOC110523166
XM_036976750.1 mRNA downstream 132522 10262705 ~ 10281350 (+) True ankrd55
NM_001281326.1 mRNA downstream 152817 10283000 ~ 10300246 (+) True gp130
XM_036976752.1 mRNA downstream 211049 10341232 ~ 10366701 (+) True slc38a9
XM_021601630.2 mRNA downstream 271912 10402095 ~ 10420627 (+) True LOC110523175
XM_021601636.2 mRNA downstream 314901 10445084 ~ 10584743 (+) False psd3l
TU415150 other upstream 278420 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 898343 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1281458 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2208009 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2435060 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 846499 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1295459 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1748146 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2978513 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3635064 13765247 ~ 13769296 (+) True G369763

Expression Profile