RNA id: TU415372


Basic Information

Item Value
RNA id TU415372
length 1507
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G365382
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10304469 ~ 10306459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAACACAAAAACACAATAGCCTATATGAGACATTAAAACTGAATGAATAAAAGGTTCTAGGAAAGACTGAGAAGTCCACTGGATTCAGGAGTGTGTTCATGTCCGTTTACTTGACCCTCACCCTGTGTTCAAACATGTCCAGAGTGACGTACGCAGTGAGAGGAGCTATGCTGCTATGCTGCTGCGTGTCCAACAGGCTCCTACTCTCCTCTGTGGTGCCCGACGTCGCCTCGCCTCCCCCCAGCCCCAACCTCACAGGGCATTCCCCTGGCGTCTGCAGCCTGTAGGGGTTGACGGGACAGCTCTCGGAGGCCTGGAGGTCTGATGGCTCTGATGATGAGTCCTCAGAGGTAGTTGACTCCAGCAGGTTGATTTCTCCGTCTTGTTGAGACAGTAAAGGGAGGAGGGTTGGGGCCAGGCCCAGGTTACTGCTCTCCTCTCTGGGTTGGCTGTCACAGAAGGTCCTGCTACCGAAGCCAgagctccatctctctgtctggtcatagACTGTCTCTTTGCCCATGTCCTGTATGTCCCCGTCTTCGGTAGAGGTTGACCCCATGATGTCGTCCGTTATGGTATTCACCTCACAGGGGTAGATCATCTCACAGAAGGTCTCGAGTTCAGACGGGTTGTTAAAGGGTTGGATCTTATGACAATCCTGTGAAGACCAGAATTTCAGGGAGCTGAGACCGGGGTTGGGCACTATCTTCCCCTTAAATCGTTTCCACCTAGGGATCAGTTAACCAATGTTACATAGAACATCCAATCATCTGACTTGTCTGACATAATTGACTTGAAGTGAGTGATGggcagtgcactaaatagggagccatttggaacacaaccaTTTACATATACAGGGAAGAACATCTGCAGCTTTAAAAAGGTTCTGAGATCTACGGCAGAACATACTGAACGACGCAGAAGAGTCCAGTGACTAGGACGATGATGACGCCGAAACCACCGAAGACACAGGACATTATGATGAAGGTCCTGCCTGatgggacagacacagagacgttATGATGAAGGAATACAACAGCAAATACTGTTTTTGGACAATTGAGCAGTAGTGTATGCATGAGGCAAAATGCTTAGTTAGAATATGTCAGAAAACCACAGAATTAAAACCACTGGTACAGACGAGTGCACGCAAGATGGCCGCAGGTCCAGCCTGCACGGAAGATCGACTTGAATGTCCGTTTTAGTAACTGTAATTCTATGGTTAGAACATTTGCTACTATAACCATGTGCTTCAAAGTGGATACATGGAATGAATATATAGCACCATAAAGAGACTTTTAAAGTGTCAATCTGTGTTACCATGAGACACTATCAGATGGTGGGTGAAGCCTACAGACATGACCTTACCGTATCTGCTCGTTGTGAAGTGAATGACGCTGCTATTGGTTGCCCCAGTAACAGCTCTGGCCATAACATGGACACTGTATCTGGTGTCTGGTTGGAGAGGCTCCAAAGTCACTCCCTGTTTCCAGCTATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415361 lncRNA upstream 50477 10253175 ~ 10253992 (+) True G365371
TU415286 lncRNA upstream 147863 10103988 ~ 10156606 (+) True G365304
TU415294 lncRNA upstream 174286 10127574 ~ 10130183 (+) True G365310
TU415220 lncRNA upstream 179999 10123525 ~ 10124470 (+) True LOC110523169
TU415221 lncRNA upstream 181298 10121917 ~ 10123171 (+) False LOC110523169
TU415387 lncRNA downstream 13951 10320410 ~ 10321195 (+) True G365397
TU415419 lncRNA downstream 27298 10333757 ~ 10334427 (+) True G365422
TU415438 lncRNA downstream 56003 10362462 ~ 10363308 (+) True G365440
TU415399 lncRNA downstream 60870 10367329 ~ 10421268 (+) True G365405
TU415499 lncRNA downstream 178637 10485096 ~ 10485465 (+) True G365499
NM_001281326.1 mRNA upstream 4223 10283000 ~ 10300246 (+) True gp130
XM_036976750.1 mRNA upstream 23119 10262705 ~ 10281350 (+) True ankrd55
XM_036976746.1 mRNA upstream 179933 10108872 ~ 10124536 (+) False LOC110523169
XM_036976747.1 mRNA upstream 179933 10108872 ~ 10124536 (+) False LOC110523169
XM_036976730.1 mRNA upstream 430240 9870627 ~ 9874229 (+) False LOC110523166
XM_036976752.1 mRNA downstream 34773 10341232 ~ 10366701 (+) True slc38a9
XM_021601630.2 mRNA downstream 95636 10402095 ~ 10420627 (+) True LOC110523175
XM_021601636.2 mRNA downstream 138625 10445084 ~ 10584743 (+) False psd3l
XM_021601635.2 mRNA downstream 138627 10445086 ~ 10584743 (+) False psd3l
XM_021601634.2 mRNA downstream 138628 10445087 ~ 10584743 (+) False psd3l
TU415150 other upstream 455315 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1075238 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1458353 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2384904 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 2611955 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 670223 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 1119183 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1571870 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2802237 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 3458788 13765247 ~ 13769296 (+) True G369763

Expression Profile