RNA id: TU415694


Basic Information

Item Value
RNA id TU415694
length 1401
lncRNA type intronic
GC content 0.42
exon number 2
gene id G365686
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10777951 ~ 10779474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgccctcaggccactactctactatcacatatctacaatgaGTACATGTGTGTAGAGTACatgtgcgtatgttatcatgtgtatgcgtgtgtctgtgcctgtgtgtgtgtctcttcacagtccccgttgttccataaagtgtatttttatctgttttttaaatccaaTTCTACTGCTTGTGTCAGTTagttgatgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccatgtagtcatgtctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtggtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccacatagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagctccacatagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtggtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttacacgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccacatagtcatggctctatgtagtactgtggaatagagttccatgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtggaatagagttccacgtagtcatggctctatgtagtactgtgcgcctcccatagtctgttctgaacttggggattgtgaagagaacACTGGTGGCATGTTTTGTTGGGTATGAATgtgtgtccaagctgtgtgctagttgtttaaacagacagctcaatgcattcagcatgtcaatacaaacaagtagtgatgaagtccatctctcctctactttgagccatgagagatttacatgcatattattaatgttagcactCTGAGTGCATTGATCGTgttgttatcaaatcaaattgtatttgtcacatacacatatttagcagatgttactgtgggtgtagcaaaatgcttgtgttcctagctccaacagtgcagtaatatctaacaattcacaacaatacacacagatctaaaagtaaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415535 lncRNA upstream 152260 10529218 ~ 10625691 (+) True G365534
TU415572 lncRNA upstream 184319 10592781 ~ 10593632 (+) True G365570
TU415209 lncRNA upstream 185954 10068899 ~ 10591997 (+) True G365234
TU415499 lncRNA upstream 292486 10485096 ~ 10485465 (+) True G365499
TU415399 lncRNA upstream 356683 10367329 ~ 10421268 (+) True G365405
TU415719 lncRNA downstream 40088 10819562 ~ 10821791 (+) True G365709
TU415731 lncRNA downstream 53153 10832627 ~ 10834462 (+) True G365720
TU416792 lncRNA downstream 84728 10864202 ~ 10864886 (+) True G366663
TU416833 lncRNA downstream 109407 10888881 ~ 10889539 (+) True G366701
TU416855 lncRNA downstream 130850 10910324 ~ 10910618 (+) True G366720
LOC110524950 mRNA upstream 121712 10654157 ~ 10656239 (+) True LOC110524950
XM_021601644.2 mRNA upstream 140866 10625909 ~ 10637085 (+) True fut10
XM_036976755.1 mRNA upstream 193208 10455299 ~ 10584743 (+) False psd3l
XM_021601656.2 mRNA downstream 140597 10920071 ~ 10928472 (+) False purg
XM_036976769.1 mRNA downstream 152062 10931536 ~ 10938611 (+) False LOC110523183
XM_021601657.2 mRNA downstream 152793 10932267 ~ 10951201 (+) False LOC110523183
XM_036976767.1 mRNA downstream 152933 10932407 ~ 10951201 (+) False LOC110523183
XM_036976768.1 mRNA downstream 155158 10934632 ~ 10951201 (+) True LOC110523183
TU415150 other upstream 928797 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1548720 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1931835 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2858386 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 3085437 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 197208 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 646168 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1098855 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2329222 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2985773 13765247 ~ 13769296 (+) True G369763

Expression Profile