RNA id: TU415719


Basic Information

Item Value
RNA id TU415719
length 1998
lncRNA type intronic
GC content 0.40
exon number 2
gene id G365709
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10819562 ~ 10821791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTAAATGAGGCACACTTTCATGAACggtctctatccccctctatcgtcattgtgttgtgtacatTCCTTTCTCATGCCGTCTATGCAGTCTGTGTGTATCTAACATAAATTAGCAGGCGTAAAAGTGTATCCTATCTGTCCAAGCCGGAAAGAACAGGCGCAatagattatggtcattgtagttaattaccacgtttctgctctgaactaggttgaatatttgcttaatGAAAACTACATTTCCCTCCAGCACAGTGTCCCACGTAGTTCTTGACTTGATTTATCCAgtgaatgatttgatttctctctagaAAACCCAACCtgaactaaatggaattcaagtcATTTTAATCGATTCGTTGTTTAATAACCCTCCCAAAAAATGTAATGTTGGTTTACCACTCAGCACTACTGTCTATGGACTCCTGTAAATATCATGGCTGTCTATAGACACCTGTAAACATCATGGCTGTCTATAGACACCTGTAAACATCATGGCTGTCTATAGACTCCTATAAGCAGCATGGCTGTCTATAGACTCCTGTAAACAGCATGGCTGTCGATAGACTCCTGTAAACAGCATGACTGTCTATAGACTCCTGTAAACAGCATGACTGTCTATAGACTCCTGTAAACAGCATGGCTgtctacccagctagcacattccgttccttggaagttgtaggaacatatgtttttggtttcacattggttgtgcGAACGAAGCCATTGTTTCCTGACTGGTAAAAATGTACgttttttaaacgttctgagaacaaAAGTAAAAATTTCACCTGTTCTCGGGaacattttactctggttccttgaaaGTATTCCTGGGAGGTTTTTTTAATGGTTTGAGAAcggaaattataggttatttggaggtttttgaataacttccttaaaactttcactgaatgtttcaataagacttttaataacagcatgccatgtttttttacACCTACAAAGCTGTTCAtattagtctattcaaacagaccccatttcaaatcaaacagatcaggtgtggccaattagtgggcgagAGCaaaacacctgaacacacttaaaaagatagaggatagagagttttgttgatgctgagaacggaatgtatgtttttaaataacattcttagaacattcTCTGAATGTTACTAAAGTTTTGTGGTAGTTTTTATGGAACCTTTTCTTCATGTTctcggaacaatttgagaacatgactttaaatagaaccatgagaaaacctgtaggaaacgttacgCTGAAGTagtgaaattcccacagaagaacgttgtttcttaacattctctgagCTATTTGAGAACAattccaatgtcaaaccagttggagaacatttctagaacattaccaaatGTTTCATTAAatgtgctgagcgattaaccaacattgttgttatttttcttttttcttttacatttttttttacccctttttcgtggtatccaattgttgtagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttgaaagtcatgcgtcctccgatacacaacctaaccaagccgcactgcttcttaacacagcgcgcatccaacccggaagccagccgcaccaatgcgccggaggaaacaccgtagaaatgttctccaactggtttgacattggaatTGTTCTAAAAtagttcagagaatgttaagaaacaacgttcttctgtgggaatttcactACTTCAGcgtaacgtttcctacaggttttctcatggttctatttaaagtcatgttctcaaattgttccgagAACATGAAGAAAAGGTTCCATAAAAACTACCACAAAACCTTAGTAACATTcagagaatgttatttaaaaacatacattctgttctcaggagtcgctggtgcgcgatgagacaaggacacccctaccgaccaagccctccctaacccgggcgacgctaggccaattgtgcgtcgccccacagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU415694 lncRNA upstream 40088 10777951 ~ 10779474 (+) True G365686
TU415535 lncRNA upstream 193871 10529218 ~ 10625691 (+) True G365534
TU415572 lncRNA upstream 225930 10592781 ~ 10593632 (+) True G365570
TU415499 lncRNA upstream 334097 10485096 ~ 10485465 (+) True G365499
TU415399 lncRNA upstream 398294 10367329 ~ 10421268 (+) True G365405
TU415731 lncRNA downstream 10836 10832627 ~ 10834462 (+) True G365720
TU416792 lncRNA downstream 42411 10864202 ~ 10864886 (+) True G366663
TU416833 lncRNA downstream 67090 10888881 ~ 10889539 (+) True G366701
TU416855 lncRNA downstream 88533 10910324 ~ 10910618 (+) True G366720
TU416861 lncRNA downstream 95336 10917127 ~ 10917431 (+) True G366726
LOC110524950 mRNA upstream 163323 10654157 ~ 10656239 (+) True LOC110524950
XM_021601644.2 mRNA upstream 182477 10625909 ~ 10637085 (+) True fut10
XM_021601640.2 mRNA upstream 234819 10475205 ~ 10584743 (+) False psd3l
XM_021601656.2 mRNA downstream 98280 10920071 ~ 10928472 (+) False purg
XM_036976769.1 mRNA downstream 109745 10931536 ~ 10938611 (+) False LOC110523183
XM_021601657.2 mRNA downstream 110476 10932267 ~ 10951201 (+) False LOC110523183
XM_036976767.1 mRNA downstream 110616 10932407 ~ 10951201 (+) False LOC110523183
XM_036976768.1 mRNA downstream 112841 10934632 ~ 10951201 (+) True LOC110523183
TU415150 other upstream 970408 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1590331 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 1973446 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2899997 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 3127048 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 154891 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 603851 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 1056538 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2286905 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2943456 13765247 ~ 13769296 (+) True G369763

Expression Profile