RNA id: TU416855



Basic Information


Item Value
RNA id TU416855
length 295
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G366720
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 10910324 ~ 10910618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCATCGAAGCCGATGTTTGGAGGATTTAACAACACCTGTGCCAATatgtcctccaaacaccggcttctctggcattatcacttaataaGAAACtgtgtggttcgagccctgaatgctgattggctgacagccgtggtatatgaaAACGTATACTACGGGTATAACAAAACATTTACTTTTACTGCACTAATTACTTCCggaaccagtttataatatcaataaggcacctctggggtttgtggtatatggccaatataccacggtgatgggatgtatccaggcactctgcgttgc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU416833 lncRNA upstream 20785 10888881 ~ 10889539 (+) True G366701
TU416792 lncRNA upstream 45438 10864202 ~ 10864886 (+) True G366663
TU415731 lncRNA upstream 75862 10832627 ~ 10834462 (+) True G365720
TU415719 lncRNA upstream 88533 10819562 ~ 10821791 (+) True G365709
TU415694 lncRNA upstream 130850 10777951 ~ 10779474 (+) True G365686
TU416861 lncRNA downstream 6509 10917127 ~ 10917431 (+) True G366726
TU416862 lncRNA downstream 6977 10917595 ~ 10917797 (+) True G366727
TU416834 lncRNA downstream 14276 10924894 ~ 10928473 (+) True purg
TU416837 lncRNA downstream 18827 10929445 ~ 10929730 (+) True G366704
TU416836 lncRNA downstream 19456 10930074 ~ 10930369 (+) True G366703
LOC110524950 mRNA upstream 254085 10654157 ~ 10656239 (+) True LOC110524950
XM_021601644.2 mRNA upstream 273239 10625909 ~ 10637085 (+) True fut10
XM_021601640.2 mRNA upstream 325581 10475205 ~ 10584743 (+) False psd3l
XM_021601656.2 mRNA downstream 9453 10920071 ~ 10928472 (+) False purg
XM_036976769.1 mRNA downstream 20918 10931536 ~ 10938611 (+) False LOC110523183
XM_021601657.2 mRNA downstream 21649 10932267 ~ 10951201 (+) False LOC110523183
XM_036976767.1 mRNA downstream 21789 10932407 ~ 10951201 (+) False LOC110523183
XM_036976768.1 mRNA downstream 24014 10934632 ~ 10951201 (+) True LOC110523183
TU415150 other upstream 1061170 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1681093 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2064208 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 2990759 7918922 ~ 7919565 (+) True G362662
TU412128 other upstream 3217810 7690440 ~ 7692514 (+) True G362554
TU416883 other downstream 66064 10976682 ~ 10977152 (+) True G366748
TU417154 other downstream 515024 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 967711 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 2198078 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2854629 13765247 ~ 13769296 (+) True G369763

Expression Profile