RNA id: TU417028


Basic Information

Item Value
RNA id TU417028
length 230
lncRNA type intronic
GC content 0.30
exon number 2
gene id G366861
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11149623 ~ 11149913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTAGAGATTAGGTAGATTTGTTTTAGAGATTAGGTAGATTTGTTTTAGAGATTAGGTAGAGTCATTTTAGAGATTGGGTAGTTTAATAGATTAGGTAGAGTAGTTTTAGAGATTGGGTAGTTTAATAGATTAGGTAGAGTAGTTTAATAGATTAGGTAGAGTAGTTTTAGAGATTGGGTAGTTTAATAGATTAGGTAGAGTAGTTTTAGAGATTGGGTAGTTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU416959 lncRNA upstream 98528 11049374 ~ 11051095 (+) True G366797
TU416948 lncRNA upstream 111256 11038051 ~ 11038367 (+) True G366786
TU416901 lncRNA upstream 137092 11012183 ~ 11012531 (+) True G366766
TU416810 lncRNA upstream 143593 11005734 ~ 11006030 (+) True G366681
TU416807 lncRNA upstream 144023 11004675 ~ 11005600 (+) True G366678
TU417045 lncRNA downstream 19152 11169065 ~ 11169437 (+) True G366874
TU417149 lncRNA downstream 272664 11422577 ~ 11422801 (+) True G366969
TU417153 lncRNA downstream 275729 11425642 ~ 11428710 (+) False G366973
TU417158 lncRNA downstream 283754 11433667 ~ 11437320 (+) True G366977
TU417195 lncRNA downstream 337535 11487448 ~ 11488048 (+) True G367014
XM_021601662.2 mRNA upstream 144982 10984720 ~ 11004641 (+) True depdc1b
XM_021601661.2 mRNA upstream 165110 10974098 ~ 10984513 (+) False LOC110523186
XM_036976770.1 mRNA upstream 165110 10974177 ~ 10984513 (+) True LOC110523186
XM_021601659.2 mRNA upstream 185901 10953016 ~ 10963722 (+) True ppp2cb
XM_036976768.1 mRNA upstream 198422 10934632 ~ 10951201 (+) True LOC110523183
XM_036976776.1 mRNA downstream 108868 11258781 ~ 11418933 (+) False LOC110523188
XM_036976779.1 mRNA downstream 108868 11258781 ~ 11418933 (+) False LOC110523188
XM_036976774.1 mRNA downstream 110920 11260833 ~ 11418933 (+) False LOC110523188
XM_036976777.1 mRNA downstream 178734 11328647 ~ 11418933 (+) False LOC110523188
XM_036976780.1 mRNA downstream 205224 11355137 ~ 11418933 (+) True LOC110523188
TU416883 other upstream 172471 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1300469 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 1920392 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2303507 8775332 ~ 8846116 (+) False cdc42se2
TU412257 other upstream 3230058 7918922 ~ 7919565 (+) True G362662
TU417154 other downstream 275729 11425642 ~ 11428710 (+) True G366973
TU417909 other downstream 728416 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1958783 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2615334 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 3105890 14255803 ~ 14259133 (+) True G370360

Expression Profile