RNA id: TCONS_00031349



Basic Information


Item Value
RNA id TCONS_00031349
length 809
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_015748
representative False

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 38225427 ~ 38230008 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AACGAGCGTTTCCGGAAAAGGCGGAGTTGAAGCGCACTCAGGCAGAACAACATCAAGTTGTTTGTTTGGTGTTTTATCAGGTTAACAGGCAGTATACATGCATTTTTGCGTTTAGATCACATTAGGCACGATTAGATCGCACATTATTAATTGATTTTCAGACATTAGGCAAGCAAAGAGGATATTCTCTGGTAGTCAGCTGTTGGTTTGCCAACCAATTTTCAATAGAAACCCGGTAAACATTGTTTCATTTATTCGCCTTAAAGTAGTTCCAGTCAAGTACTTATGAGTTTGATTtgtcttttgaacacaaaataagtgtTTATTCTTCAAAAGTGGGCTCAAAAGAAGAAATTCAAAGAGAAATGGCTTGGTTCCACCATGCTTTGCAAGGCTCGGGCCAGCCAGATGCACCCACCGTGGAAGATGTGTCCCATACACAGGTCTCTATGCACACCATTACCCAGTTAGGAATGTCTGATGGACAAGGTTGGTCAACCCTCCCTTCGGTCTCCATCTCAGACTTTCCCTCTGCCTCAGGAGGAATTGTCCCCCAGCGACTGGAAGCTCTGTCCTGCACATCTCTCAGCATGGGCTCCAGACAAGATCCTGTGCCGCTGTCTTTTGTGACGCTTCAGGAGCAAAGATGTGTGCTCAGCTGGTTTTTGGGATGGAATGTTGCTCAGAAACAACGCTTTCTGGAAGATCTGATCTCAAAGGCTGTACCTGGAAAGGTGTCTAGTTTATTAGACCAGCTCAACACACTACAGGTGAACGATCGCCCTCCCAACATTTTTGAATGCCAGTTA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000141614

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033287 lncRNA upstream 225233 37999779 ~ 38000194 (+) True XLOC_015741
TCONS_00033286 lncRNA upstream 244369 37975579 ~ 37981058 (+) True XLOC_015740
TCONS_00033285 lncRNA upstream 246927 37974996 ~ 37978500 (+) False XLOC_015740
TCONS_00033284 lncRNA upstream 251689 37972938 ~ 37973738 (+) True XLOC_015739
TCONS_00033283 lncRNA upstream 254383 37967985 ~ 37971044 (+) True XLOC_015738
TCONS_00033617 lncRNA downstream 51268 38280982 ~ 38283096 (+) True XLOC_015751
TCONS_00031357 lncRNA downstream 140821 38370535 ~ 38371944 (+) True XLOC_015753
TCONS_00033288 lncRNA downstream 186303 38416017 ~ 38422233 (+) True XLOC_015755
TCONS_00033618 lncRNA downstream 510071 38739785 ~ 38741555 (+) True XLOC_015757
TCONS_00031365 lncRNA downstream 617029 38846743 ~ 38852656 (+) False XLOC_015758
TCONS_00031348 mRNA upstream 41786 38161318 ~ 38183641 (+) True XLOC_015747
TCONS_00031347 mRNA upstream 68088 38151308 ~ 38157339 (+) True XLOC_015746
TCONS_00031346 mRNA upstream 70471 38147761 ~ 38154956 (+) False XLOC_015746
TCONS_00031345 mRNA upstream 159254 38055529 ~ 38066173 (+) True XLOC_015745
TCONS_00031344 mRNA upstream 170945 38039857 ~ 38054482 (+) True XLOC_015744
TCONS_00031353 mRNA downstream 32034 38261748 ~ 38269675 (+) False XLOC_015749
TCONS_00031354 mRNA downstream 35250 38264964 ~ 38269411 (+) True XLOC_015749
TCONS_00031355 mRNA downstream 41678 38271392 ~ 38275658 (+) True XLOC_015750
TCONS_00031356 mRNA downstream 58594 38288308 ~ 38289751 (+) True XLOC_015752
TCONS_00031358 mRNA downstream 143558 38373272 ~ 38392575 (+) True XLOC_015754
TCONS_00031335 other upstream 347123 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 388507 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 1023840 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 1081810 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 1471669 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031374 other downstream 1827185 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 2806362 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 4193970 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 4357024 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 4769088 42998802 ~ 42998919 (+) True XLOC_015810

Expression Profile


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