RNA id: TU417158


Basic Information

Item Value
RNA id TU417158
length 3618
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G366977
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11433667 ~ 11437320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTGTCATCTTGAAAACACCTGTGTAATACATCATGTCACATACACATAAAAGTAAATATCCAGCTCATGAGTAGTTCATACAAGGAAAATATAATACTGTAGGTCACTATAATAGTACAATTATGTATTATCAGTTTAGGTCCATCTGAAGACTCAAAAGAGATACAGCAAACATTTTCTGTTACAGGATAGCTATTATACAAATCAAGAATTCAAAGAAACCACTTGACTTCTTTCTTTTTTACCAGACACGCCATTGACACGTTTTATTACTACCAGTGTGTCTCTACAGCCGAAGAGTCCGATTCAAACActcccagctacagtacagacatgtTGAGAACGTGTGAAAGAACAGCAGGAGAAAACGACATTTAGCAGTTGCATGGTGAATTTGTGAGAGGCTTTTGAGGGTTTGTTCACCGCTTGAATTCTAATTGTGTTAGGCTACATGGAGGAAAGGTCCCAGAGAATATTGGTGAGGTGAGCAGCTGGCGTTACGCTTGAACAGATGCGACGCCAGAATAGGGCAGGCTAGGATCTCTGAACTGGCTTCTCCACGTTCACAAAGCAGAAAATGCCAGACCGAGGAGCAGCGCACTACAAACAATTGTTTCAAAAAGGTGAAGGGAAAGTGACCTGCTGTCAAGGACACCGTACTGTACATAGTAGAGTGCCAATTAACCTAAGAGGGGTCAAGGGGGTCAACATTTGATCATTAGTGTGTTATCATTAGAGCCCCTGGTATACAGAGAAGTACGCTGTTtctctttttgtgtgtgttatgaaTGGAATGACAATGCCGTTTATGACTTATTCAATAACAAAGGCTAAAGTGACCTGTTATTAACCAgtttgtcttgtttctgtccaTACTGCATATACCGTAGTAAGGCTTCATCTCTGTCTCAATGTTTCACAGAAGCTGAACAGACAACACTTCAATATCTTGGGACCCGCATACTAAGAGGGCTGTTGTTACTGCACCAGAAAACACAATATAAAGCTGTACACATGCTGAAGTCTATAAAACAACAAATAGTATATATTTCATCAAGGAGGTGGATGAATGTACAAGGGGAGGCAGCCAATCACACATAGAATTCTCTCTCATTCACACGTACAGCATTCTCTCTACCACTTTGTCGACAACTGTCTTGGCAGCGGAACCATCTAGAGACGTTTCCCGTCTTTAGATAACAGTGTTGACATTGTGAGAAAATGACTTGGCTTTCTGACAGGCTGCATTTTCTCACTATCACACGTCACAATCATGCCCACTGGGGTTCAGTTGGGAAGACATCGGAACTTGCTTTCTCTTGTTCCACTATTAGGACTCGTCTTACGTTTTCCGCTACAAAAGTAGGAGACTTTCCACTACGCCCCTGGCCCATTGAACCCCTACTCACACACCACTCGTAAAAAGGAATTCAATCCTAACAGTTATGCATGGCACAGACTGATGGCTATTCACAGAGaaacaggcttttaaaatatTGCACTTATTGGCCCATTGCACCTCAAGACGAGACCTGAAGGTgcacaaatacaatacaataagTATAccgatatagatatatataaataGAACTTGCAAAATTTCATGCAAGTGTGCTGCTGAAAATTGTTTGCTACTGAAAATGCAACGATTCGGAGGCAGTTCGTTTTCACAAGTGCAACAATCGATTGCAGCATTTTCTACAAgacactatttggcatgacaCTTGGTCTAGCTAATAGTAACATACCCTTTTTCACAAAATAATCTAACAACACCTAAAAACAGCTTCCTTTCTATTTGTTTTATAGCACATTGGCACGTGGGGATAACTGTCTCTGGTTTCTTCAAGGGAACTTTTCTATAACAATAGAAAAGTAACAGAGTCGAAAACAGAAGTAAAACATTACTGCAAGTACAGTAaatgaatggtgaataatgtcAGAAGGAGTGTCTCTAATAAAAAGTATTTGAGGTGAAGTCCAGAGAATGAGATGGTATGAATTATGGAAGTGGCTCCTTATTCATAATCCTGTAGTCAAGTCAGGTCAGACTTTTGAAATATTGATGCCGTGACTCACATCCCTGAAATAGTTGTCTGGGACCTCTCCTTGGGCTCTCTGTATGTCTCACAATGTCTCTCAATCTGTATTGTTCCAGGAACTGGCATTATTATGAGCTTTCTGCTGTTAATTTAGGACCATTTCATTAACAGTCGCAGCACTGGACCTAGCACTGCAGTACGGAACCCATTTGAGGACATCCGTAAACCCAGACTGAAACGTACGGCTGACAACTGAGAATGACCTACAATGGATTCCGCACTGCAGAAATGATTAGGTCTTAGTTACTCCAGATGACTGACCAGTTGGCAGTATTGCACAGACCATTGCTTGTACATAGATATAACATTGAGAAACTGTTCTCTGCACTCACAGATGCATACTGTTTTCAAACAACAGTCATCGGGTTAGTAATCATACCACTTTACAGCCACATTAAATGTACCACTTATTTAATGAAGTAAACTGTTAAATACCACACTGGCATTATTATCATGACTACCTACCTATCCTACaatatagtactgtacatgttagtATTAGACAACTGTTATACTATGGCAGCTAATCCACAGTCACTGAACAAACTACTTTATTAATATCCTGAGAATAAAGCCATGCATCTGTCTAACCACAGATAAATACATTGGTTCTAACCACAGATAAACACATTGGTTCTAACCACAGATAATCACATTGGTTCATTCTAACCTCGGATAATCACATTGGTTCATTCTAacctcagataatcacattggTCCATTCTAACCACAGATAATCACATGGGTTTCACAGCTAGTGTGGCGATGGAAAAAATATGAAACAATATACAAACAACTAACTGAAAGGCATCACTTTCGTAAGGTAGGTAATACTTTTTTACGGTAACGTTCAATGCTTaaaagtgacacacacacacacacacacacagtaggaatAGTGGGAGGGAAGAAATACAGGATATGCAAGAGGGAACTGGCAACTTAACCATACACAGATCATCATGTCATTGACAGAGCATTCCATAAACAACACACTATTTTCTCTGGTTAATATAGTATATAGAAGATcctgtatttctgttttatataaataaatagataaatgTACCGACTGACGTGGCATTAGTGATTCATGGTCATCGCATACTGACATGGCATTACTGTACATGTCTATTTTTCAGTTTTGTGAACGTACAACATATGTGTCAGACAATttgaaacataaaaaaaatctgaaaaaatgtACTAGGCACATCAGAAGTCAGATATGAAGAATAATACACTTTAAGGTATTACAGATCTACCTAAGGGATAATACAATATTTTGGCAATCTCATACGTCTTAGATTGTTGTCATTTTCCTGGTTAACAACCGCAGTTGGGCTGCTGCAAGGGAGGAGGGTTGTCAGTTAGCCTAGCATTGGACGTTCCTGTGGTGACAGACGGGTCAGTCTCTAAACTGTCGGACATCTTGTCGCATATGAGGTCGACGAGACGCTCAAATGTTTGTTTTACGTTGACATTGTCCTTGGCACTCGTCTCGAAGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417153 lncRNA upstream 4957 11425642 ~ 11428710 (+) False G366973
TU417149 lncRNA upstream 10866 11422577 ~ 11422801 (+) True G366969
TU416938 lncRNA upstream 167670 11146283 ~ 11265997 (+) True G366777
TU417045 lncRNA upstream 264230 11169065 ~ 11169437 (+) True G366874
TU417028 lncRNA upstream 283754 11149623 ~ 11149913 (+) True G366861
TU417195 lncRNA downstream 50128 11487448 ~ 11488048 (+) True G367014
TU417630 lncRNA downstream 105278 11542598 ~ 11542839 (+) True G367420
TU417634 lncRNA downstream 109724 11547044 ~ 11547288 (+) True G367424
TU417641 lncRNA downstream 115175 11552495 ~ 11552834 (+) True G367431
TU417646 lncRNA downstream 117177 11554497 ~ 11554732 (+) True G367436
XM_036976776.1 mRNA upstream 14734 11258781 ~ 11418933 (+) False LOC110523188
XR_005051640.1 mRNA downstream 65323 11502643 ~ 11507284 (+) True LOC110524952
XM_021601667.2 mRNA downstream 70369 11507689 ~ 11513262 (+) True LOC110523192
trnaa-agc-2 mRNA downstream 164140 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601680.2 mRNA downstream 366600 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 395589 11832909 ~ 11854832 (+) False lmnb1
TU417154 other upstream 4957 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 456515 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1584513 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2204436 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2587551 8775332 ~ 8846116 (+) False cdc42se2
TU417909 other downstream 441009 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1671376 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2327927 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2818483 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2883784 14321104 ~ 14325895 (+) True G370382

Expression Profile