RNA id: TU417718


Basic Information

Item Value
RNA id TU417718
length 2859
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G367505
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11608719 ~ 11611874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACTACTGCAAAGCTATTACCATTACAACAGAGCCGTATCAAAGCTACATTAAAGTGTTACAAGTCACAAACAAAGTCATAATTTATTATTAACAACAAAGTTTTCATTCAATCCATTGTTGGAACCATTTATAGATAAACCTAATATACAGAAGACAAAGTTGCCTGAGAAAAATGATGACGTTGTACTATAGCAACCACTAAtgaaaccagtggaggctggtgggcggagatagaggaggacgggctcattgtaatggctggaatggaacggtgtcaaacatgtggtttccatatctttgatgtgtttgataccgttccctTAATTACATTCCAGCCATTACGATGAGACTGTCCTCCTACAGCgccccccaccagcctccactgaatgAAACACATGTACCCAGCAACATAGGAGACAGGATAGACACTCGCAGAACATCAGCAAAGACTGTGGGTGATCTCTAAGTACATTTACACTGGAGCATCTGAGTGTCTTTGTACTTTGTTCCATTAACCACCCAAATGTAAGAACATTGACGTTCCATCAACCAATCACATGTAAGAACATTTAAGTGCCCTTGAGTGCTTGAACAGGTTTCTTGCTTAAAAAGGTGACCTTGGTAAGGAGCATTTTATATCACATtaacagagtgtacaaaacattaagaacacctgctctttccatgacatagaccaaccaggtgaaagttatgatcccttattgatgtcacttgttaaatcaatcaactttaatcagtgtagatggaggggaagagacaggttaaaggatttttaagccttgacacaattgaaacatggattgtgtatgaagTGCCATTGAGAGGGTGAATGTGCCAGATAAAATACTTGCCtctgaacaggatatggtagttgGTGCTAGGagcatcggtttgtgtcaagaactgcaacgctgctgggttttccacgCTATATAGTTTCCTAGGTCACCTCAAGaacagtccaccacccaaaggacatccagccaacttgacacaactgtaggaagcattggagtcaacatgggccagaatccctgtggaatgctttctacaccttgtagagtccatgctcgcagaattgaggctgttctgaaggcaaaatgagtgccggggggggggggctcaatattaggaaggtgttcttaatgtttgatATACTCAGTGAATATGCTACCATTTTAAAATGGTGAAATGAACAATGAAATACCTGTTTTGAATAGAACAGTATACTTGTAGTGAAATCTTTACTTAATATGTTGGCTTAATGGATTCGTCATTTGTCTCACTTCATTCTAAGAGGTCATTGCACCTCTATTTGTTGTAGTTATTTACGTCTGTATTTGTCAGGGCAAATCACTCAAAATAACTGTGTTATTGTTGATGTTGACATTTTTATTCTGATACCCATTATGTATTTGTACTATACTTCTTATTTCATTCTATTGAATGAAAGGTTCATTATCTGAATTTGATTGATACACTAAGCTGACAAATGTtgtcaagcagagagagagaggtgatactgtagtagttacagtaaCAAGTCATAGTGCAAAGGTGATCTTGTGCAGAGTTGCATTAGGCAGAAATGGCATGGGATGATTTCTTCTACATCTTCCTGTATTTTGTTAAAtgtatctaggcaagtcagttaagaacaaattcttattttcaatgatgacctaggaacagtgggttaactgccttgttcaggggcagaatgacagatttttaccttatcagctcatggattcgatcttgcaaactttcggttactaggctacctgcctctctaaccactaggctacctgcctctctaaccactaggctacctgcctccctatAAAGATACTACATCTGTATGTGCCATTTTTCTCAACATGCTCCAAATCTTGGTTTGCAGTAGACTTGAAAAATGTGTAAATGTCAAGTTACAGCTAAAtgctattattatttttgtttagCACTTCAAAAAGGTTCTGTTTAGAAAATTGTATCAGGTATTTTTTGGTGGATTAAATGACTGACCGAAATATTCATGATATTTCACAAAAAAAATTGGATTTTGCATGAATGACTCGGATGAAAGATGTGTGAAACAATGAATGCACAATCAAAGGTTCAGGACATAAGACAGGGCATTACAAATGTTAGTTTTGAGTTAGTAGTTTTGTTCTTAGTTATATTCCACTTACTTCTGAAAAATGCACCTAAAAATAAAACACCGGTAAAACCCACAGAAAGTTTTTACAGAACAGCTTAAATGACATAACCAGTCTTAGCAATGACTCACTCTCTTTTTGGTTGGGAGATTGAAGGTCTCTGGTGTCCTAATACTCTTCTGTTACCTTTCGTGCTAGTTAATATAGCTCCATGGGGACTCTAGTGAACCTAACCAAGGCTGATAGGTTACACATGCTACTGTAGCGTAAACTCAAGATGAAGGGCTTTCAAATAAACATGAATTTCAAAGTACTTCATAGGTTGGCTAATGAAGTATTTGACAGCACATGCAGAATCATTTTAAGGTCAAAGCTGTGGGTCTATGAAGTATAGTTTCAAAGCAGCCGAACATGGTTTTAAAGTAGCTCTGATCACAGCCGAACATGGTTTTAAAGTAGCTCTGATCACAGCCGAACATGGTTTTAAAGTAGCTCTGATCACAGCCGAACATAGTTTCCTTGTTCattaatacatacagtacattttggTAATTTATCCAAAGCTCTTATCCTGAGCGACACATTCAGGCAGAGCAACCTGCTAGAAAGTATCGTCTGGTTGATGATGATCAGTGGTCGAACATCTGATAAATTACCACTCGATTAAGGCG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417691 lncRNA upstream 16341 11591912 ~ 11592378 (+) True G367480
TU417646 lncRNA upstream 53987 11554497 ~ 11554732 (+) True G367436
TU417641 lncRNA upstream 55885 11552495 ~ 11552834 (+) True G367431
TU417634 lncRNA upstream 61431 11547044 ~ 11547288 (+) True G367424
TU417630 lncRNA upstream 65880 11542598 ~ 11542839 (+) True G367420
TU417719 lncRNA downstream 1434 11613308 ~ 11613608 (+) True G367506
TU417733 lncRNA downstream 6246 11618120 ~ 11618340 (+) True G367520
TU417742 lncRNA downstream 20614 11632488 ~ 11632839 (+) True G367529
TU417743 lncRNA downstream 21145 11633019 ~ 11633228 (+) True G367530
TU417745 lncRNA downstream 23219 11635093 ~ 11635302 (+) True G367532
trnaa-agc-2 mRNA upstream 7187 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601667.2 mRNA upstream 95457 11507689 ~ 11513262 (+) True LOC110523192
XR_005051640.1 mRNA upstream 101435 11502643 ~ 11507284 (+) True LOC110524952
XM_036976774.1 mRNA upstream 189786 11260833 ~ 11418933 (+) False LOC110523188
XM_021601680.2 mRNA downstream 192046 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 221035 11832909 ~ 11854832 (+) False lmnb1
XM_021601681.2 mRNA downstream 221102 11832976 ~ 11854832 (+) True lmnb1
XM_036979096.1 mRNA downstream 307864 11919738 ~ 11921477 (+) False LOC110523202
XM_036979093.1 mRNA downstream 307864 11919738 ~ 11922926 (+) False LOC110523202
TU417154 other upstream 180009 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 631567 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1759565 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2379488 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2762603 8775332 ~ 8846116 (+) False cdc42se2
TU417909 other downstream 266455 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1496822 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2153373 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2643929 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2709230 14321104 ~ 14325895 (+) True G370382

Expression Profile