RNA id: TU417780


Basic Information

Item Value
RNA id TU417780
length 220
lncRNA type intronic
GC content 0.44
exon number 1
gene id G367563
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11694420 ~ 11694639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accttggcttctactgcattcgcgtaacaggcagtctccttgtggagtgcacaaggactagttaactgtaaggttgcaagattgaatcccccgagctgacaaggtgaaaatctgtcgttctgcccctgaacgaggtagttaacccaccgttcctaggccgtcattgaaaataagaatgtgtttttaactgacttgcctagttaaaaatattaaataaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417779 lncRNA upstream 1283 11692906 ~ 11693137 (+) True G367562
TU417775 lncRNA upstream 9442 11684758 ~ 11684978 (+) True G367558
TU417774 lncRNA upstream 10508 11683634 ~ 11683912 (+) True G367557
TU417767 lncRNA upstream 19024 11675189 ~ 11675396 (+) True G367550
TU417766 lncRNA upstream 19657 11674541 ~ 11674763 (+) True G367549
TU417782 lncRNA downstream 2463 11697102 ~ 11697330 (+) True G367565
TU417830 lncRNA downstream 10272 11704911 ~ 11705213 (+) True G367613
TU417845 lncRNA downstream 51231 11745870 ~ 11746091 (+) True G367628
TU417848 lncRNA downstream 53835 11748474 ~ 11749905 (+) False G367631
TU417850 lncRNA downstream 53835 11748474 ~ 11749971 (+) False G367631
trnaa-agc-2 mRNA upstream 92888 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601667.2 mRNA upstream 181158 11507689 ~ 11513262 (+) True LOC110523192
XR_005051640.1 mRNA upstream 187136 11502643 ~ 11507284 (+) True LOC110524952
XM_036976777.1 mRNA upstream 275487 11328647 ~ 11418933 (+) False LOC110523188
XM_021601680.2 mRNA downstream 109281 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 138270 11832909 ~ 11854832 (+) False lmnb1
XM_021601681.2 mRNA downstream 138337 11832976 ~ 11854832 (+) True lmnb1
XM_036979096.1 mRNA downstream 225099 11919738 ~ 11921477 (+) False LOC110523202
XM_036979093.1 mRNA downstream 225099 11919738 ~ 11922926 (+) False LOC110523202
TU417154 other upstream 265710 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 717268 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1845266 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2465189 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2848304 8775332 ~ 8846116 (+) False cdc42se2
TU417909 other downstream 183690 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1414057 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2070608 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2561164 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2626465 14321104 ~ 14325895 (+) True G370382

Expression Profile