RNA id: TU417850


Basic Information

Item Value
RNA id TU417850
length 1498
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G367631
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11748474 ~ 11749971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAAAATGAAAGTATTTTTGCATTTATTAGACAATTTTATCACTTAGATGCGTAAGAGGAATGTCAAAATAATCTCTTCCCCGCCCCCAGTTGCCCACCATCTCTCAATATATTCAGATGCATACACATAAACAGACCAAATTCAACCAACAGTTCAATCAACTATACACACAACTACCTAAACAAAGACAATATGCAGGGAGCAAGATGAAGACAATGCACAACGGATATTACATTTACAATCAAGGTGGAATTTTTTGGAAGATGTAACCAAGAGGTAACAGCAATCTCAAGTTCGCTTGTTGCCACATTTCACTGGCAGTTTGCATGATTTGGATGGTTCCTGTTTGAACTTTACCCAGAAGACATCATACCACAGAAAAAGCAGTAAACAAAAAGTTGCATTGGTTTGATCTACATGAATCAAAACAAATTCCTTCACACATCATTGAACAAAAAGCAGAATAATTCAATGAAACAAAATCAACCACCAAAAAACAAAACAGGTCTGAGTAGGACTGGGTTATATTACATAAACACAGAATTAGAATGCCTAGAAAAGACACTATTCCTCCATAATGTATGCACTAACAATGTCTGTTCTACAAATTCTAATTCTACAGTGGTACAgccaggtgtgttgttgtttctCACAGTGACGCTCATGCACAGGGACTATTTGACGAGTTGACATGGCTCGCCTGGGATTTTACTTTCATAGGGGTGACTCCTAACTTCCACTTAAGCAAAATGTTCACTTAGTCATGCGTTAATGTCAACAGGACACCAACTGACATTATTCGACTGGAGAGGAAGTTAGGATTTGCTCCATAGTGAGCGGTAGGGGTGGGTGCCCTGGCCTAGCAGCTAGCCTGACAGGCAGACAGCTGCATGAGGGGGAAACACTGAGGATGACCCTATGGTCAGACTGGGAGTCCACCTCGCCACATTGGGTTCCCTCCCGTCAAGCCAGCTGGGAGGGTTAGGCTACAGCAAAAAATGGCATCACTCCCTTGGGTGAGAAAGAGGACTAAGCCAGAAGAGGGGATAAGGTCTGAGGGGACCCCGGTGTCCCCAGAGTATACCGCCTTCAACCAGAGAGAACCAAGGATATATGAGCGGTCGgggaaagacagagctagaggtcTACCTGATTCAACAAACGCTCGCAGAGCCGTCTCTTGGGACAGTTCTATTGATGGAAGTAAGAGTTCTATTGATGGAACAGTTCTATTGATGAAACAGTTCTATTGATGAAAGTAAGAGTTCTATTGATGGAACAGTTCTATTGATGAAACAGTTCTATTGATGTAAGTAAGAGTTCTATTGATGGAACAGTTCTGTTGATGAAACAGTTCTATTGATGAAACAGTTCTATTGGTGAAACAGTTCTATTGGTAAAACAGTTCTATTGGTGAAACAGTTCTATTGATGGAACAGTTCTATTGATGAAACAGTTCTATTGATGGAACAGTTCTATTGATGGAACAGTTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417845 lncRNA upstream 2383 11745870 ~ 11746091 (+) True G367628
TU417830 lncRNA upstream 43261 11704911 ~ 11705213 (+) True G367613
TU417782 lncRNA upstream 51144 11697102 ~ 11697330 (+) True G367565
TU417780 lncRNA upstream 53835 11694420 ~ 11694639 (+) True G367563
TU417779 lncRNA upstream 55337 11692906 ~ 11693137 (+) True G367562
TU417847 lncRNA downstream 157 11750128 ~ 11752425 (+) True G367630
TU417852 lncRNA downstream 2674 11752645 ~ 11753051 (+) True G367632
TU417853 lncRNA downstream 4079 11754050 ~ 11754260 (+) True G367633
TU417854 lncRNA downstream 5404 11755375 ~ 11755807 (+) True G367634
TU417855 lncRNA downstream 6443 11756414 ~ 11756660 (+) True G367635
trnaa-agc-2 mRNA upstream 146942 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601667.2 mRNA upstream 235212 11507689 ~ 11513262 (+) True LOC110523192
XR_005051640.1 mRNA upstream 241190 11502643 ~ 11507284 (+) True LOC110524952
XM_036976777.1 mRNA upstream 329541 11328647 ~ 11418933 (+) False LOC110523188
XM_021601680.2 mRNA downstream 53949 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 82938 11832909 ~ 11854832 (+) False lmnb1
XM_021601681.2 mRNA downstream 83005 11832976 ~ 11854832 (+) True lmnb1
XM_036979096.1 mRNA downstream 169767 11919738 ~ 11921477 (+) False LOC110523202
XM_036979093.1 mRNA downstream 169767 11919738 ~ 11922926 (+) False LOC110523202
TU417154 other upstream 319764 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 771322 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1899320 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2519243 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2902358 8775332 ~ 8846116 (+) False cdc42se2
TU417909 other downstream 128358 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1358725 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2015276 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2505832 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2571133 14321104 ~ 14325895 (+) True G370382

Expression Profile