RNA id: TU417847


Basic Information

Item Value
RNA id TU417847
length 2298
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G367630
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11750128 ~ 11752425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACAGTTCTATTGATGAAACAGTTCTATTGGTGAAACAGTTCTATTGGTAAAACAGTTCTATTGGTGAAACAGTTCTATTGATGTAAGTAAGAGTTCTATTGATGTACAGTAGGTTCCGATACACAGTCTGGAAATGTTGCATGTTCTCCCTGATGATATACAGTGAGGCAGTGGTAAGGATACCTAACTAGCAGTAAACTGCAGTCACGGCACCTAGATGGCTGGGTGGAATTGGATATGTAGTGTCTCTTTTAAAGACAGTCCAAAATACCTATTttagagacaacagagaggagcaaggtaaaaacacacagagaaataTGCAGTACAAATTAATGAATAAATATTTGTGCATATACTTTTCTATAATGGATATATTAACATGGGATTTGTTTAATGTCCAAAAATATTTTCTTAATATTTCAAAATAAATATGGAATGGTAACAATGCATACTTGTATGATATCTAAATACATTCCTGATATTTTGTCAATTCTTTCTAAGGGGACTTAAGGTGGAATGAATAGCTTTAGGCCATTTACTTTGTTGTAAACATCCCCTGGATCGGAGTGTAGATAGATAGTAGTGTGTAGTTATGACTGACGAGCAGACTTCCACACTCCCCTACAGTAAAGTAAACAAGTTCAGTAAGGGCTATGAGATATCACTCTACACAGCAAAACCATCCCACATGGTGCTCAGCAACATCAAGAAATAGGATCCAAGCAAACTAgtgtaaaataaaatattaaaacatGTCTTCAAGAAACACATCATTTGGTTAACGGAAGAAATGAGAAAAAAACGTCAAATGACATTGTACAACTGCCCCAtagtaaaaacaacaacatgactTAACAGAACAGCAGGTTGGGAAAAAAACATTGTATCTTGGCTTCCCTTGCATTGTGTTTTGCCAGAATGACCTCATCATTGAACAATCAGATCTCTACTACTAAAAGGCATTCATATCGCCACTTTCCACTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAATTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAACCCTTTCCAGTGTTAAAGTAAAGCTTTCCTTAAGGCATTGACATCAAACCAAAACAAAATGATCATGCACAGTGAAATTTGCTGAATTAGTTCAGAGAAACTCCCAAAATGTCTTGTTTAGTAAACACTCACAAACTCCTACTGTACCTAGACATAGTCGTAGTTCGAAAAGCCAACACCAGATAAACATAAATAACATTTATATCGCTGCTGAAGCAATGTTCAACATAATTCATAATGAATGCACACACGTCCCCCGACTCCTGAACACTGGTCAGTGTAAAGGAGAGCGCTCCCAAATAGAAATAGTCACAACTCCGTACTAGGGTCAGTTCTAAAGACTTTCCCAGAAAGCAGTCCCAATGGAAAAAGACAAATGGAATAGCAAAGACATTGCAGTGAGTGTACCCAAGTGTATTCGACCGTGGAAACATCACAGTAATGGTGGTTTTGTCCTCTTGAGCGTAAACTCAAAACCTGGATATACCAGCTACAGTTTTGCAGTAGTGTTGTTGTATGACGGTAGTGTTGCATGTACAGTAAAAGGGTAAGCAAAACAAACAACGTCAATGTCAATCACAAATGATCAAAATCTAACCACTGTAGAGGCCCCACAACGTCAGGAAGTGGGGAATAACAATCACCCAATGAGATATGCAGTCTTCGATCACTCAGCCAGTCAGTCGACGCATTCTCTCGTCTTCATGGCTACATCCTGACCCTAGAATGCTGAAGTAGAACGTAGTCCTGATTGGATGCTGGGGGGGGATATTCTACATCTCCTCGTAGTCTACGTCTCCGGCGAGAAAAGACTCCAGGTCGTCAACCACGCCTCCGGCTTTCTTGGTCGACTTTgacttcttctttttcttctctttctcgtCCCCGCTGCCTGACTCCTCCTTTTTCTTCTGTTTGTGTCGTTTCTTGCTGCTTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU417850 lncRNA upstream 157 11748474 ~ 11749971 (+) False G367631
TU417851 lncRNA upstream 157 11748536 ~ 11749971 (+) True G367631
TU417848 lncRNA upstream 223 11748474 ~ 11749905 (+) False G367631
TU417849 lncRNA upstream 223 11748536 ~ 11749905 (+) False G367631
TU417845 lncRNA upstream 4037 11745870 ~ 11746091 (+) True G367628
TU417852 lncRNA downstream 220 11752645 ~ 11753051 (+) True G367632
TU417853 lncRNA downstream 1625 11754050 ~ 11754260 (+) True G367633
TU417854 lncRNA downstream 2950 11755375 ~ 11755807 (+) True G367634
TU417855 lncRNA downstream 3989 11756414 ~ 11756660 (+) True G367635
TU417856 lncRNA downstream 6795 11759220 ~ 11759448 (+) True G367636
trnaa-agc-2 mRNA upstream 148596 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601667.2 mRNA upstream 236866 11507689 ~ 11513262 (+) True LOC110523192
XR_005051640.1 mRNA upstream 242844 11502643 ~ 11507284 (+) True LOC110524952
XM_036976777.1 mRNA upstream 331195 11328647 ~ 11418933 (+) False LOC110523188
XM_021601680.2 mRNA downstream 51495 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 80484 11832909 ~ 11854832 (+) False lmnb1
XM_021601681.2 mRNA downstream 80551 11832976 ~ 11854832 (+) True lmnb1
XM_036979096.1 mRNA downstream 167313 11919738 ~ 11921477 (+) False LOC110523202
XM_036979093.1 mRNA downstream 167313 11919738 ~ 11922926 (+) False LOC110523202
TU417154 other upstream 321418 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 772976 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1900974 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2520897 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2904012 8775332 ~ 8846116 (+) False cdc42se2
TU417909 other downstream 125904 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1356271 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 2012822 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2503378 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2568679 14321104 ~ 14325895 (+) True G370382

Expression Profile