Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00033617 |
| length | 837 |
| lncRNA type | read_through |
| GC content | 0.44 |
| exon number | 3 |
| gene id | XLOC_015751 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 38280982 ~ 38283096 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0001706 | endoderm formation | biological_process |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | biological_process |
| GO:0080090 | regulation of primary metabolic process | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043009 | chordate embryonic development | biological_process |
| GO:0051171 | regulation of nitrogen compound metabolic process | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0009888 | tissue development | biological_process |
| GO:0031323 | regulation of cellular metabolic process | biological_process |
| GO:0051252 | regulation of RNA metabolic process | biological_process |
| GO:1903506 | regulation of nucleic acid-templated transcription | biological_process |
| GO:0010468 | regulation of gene expression | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0060255 | regulation of macromolecule metabolic process | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0050794 | regulation of cellular process | biological_process |
| GO:2001141 | regulation of RNA biosynthetic process | biological_process |
| GO:0009792 | embryo development ending in birth or egg hatching | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033287 | lncRNA | upstream | 280788 | 37999779 ~ 38000194 (+) | True | XLOC_015741 |
| TCONS_00033286 | lncRNA | upstream | 299924 | 37975579 ~ 37981058 (+) | True | XLOC_015740 |
| TCONS_00033285 | lncRNA | upstream | 302482 | 37974996 ~ 37978500 (+) | False | XLOC_015740 |
| TCONS_00033284 | lncRNA | upstream | 307244 | 37972938 ~ 37973738 (+) | True | XLOC_015739 |
| TCONS_00033283 | lncRNA | upstream | 309938 | 37967985 ~ 37971044 (+) | True | XLOC_015738 |
| TCONS_00031357 | lncRNA | downstream | 87439 | 38370535 ~ 38371944 (+) | True | XLOC_015753 |
| TCONS_00033288 | lncRNA | downstream | 132921 | 38416017 ~ 38422233 (+) | True | XLOC_015755 |
| TCONS_00033618 | lncRNA | downstream | 456689 | 38739785 ~ 38741555 (+) | True | XLOC_015757 |
| TCONS_00031365 | lncRNA | downstream | 563647 | 38846743 ~ 38852656 (+) | False | XLOC_015758 |
| TCONS_00031370 | lncRNA | downstream | 753086 | 39036182 ~ 39046184 (+) | True | XLOC_015762 |
| TCONS_00031355 | mRNA | upstream | 5324 | 38271392 ~ 38275658 (+) | True | XLOC_015750 |
| TCONS_00031353 | mRNA | upstream | 11307 | 38261748 ~ 38269675 (+) | False | XLOC_015749 |
| TCONS_00031354 | mRNA | upstream | 11571 | 38264964 ~ 38269411 (+) | True | XLOC_015749 |
| TCONS_00031351 | mRNA | upstream | 50974 | 38226624 ~ 38230008 (+) | False | XLOC_015748 |
| TCONS_00031350 | mRNA | upstream | 50985 | 38226145 ~ 38229997 (+) | False | XLOC_015748 |
| TCONS_00031356 | mRNA | downstream | 5212 | 38288308 ~ 38289751 (+) | True | XLOC_015752 |
| TCONS_00031358 | mRNA | downstream | 90176 | 38373272 ~ 38392575 (+) | True | XLOC_015754 |
| TCONS_00031359 | mRNA | downstream | 271164 | 38554260 ~ 38709083 (+) | False | XLOC_015756 |
| TCONS_00031360 | mRNA | downstream | 273099 | 38556195 ~ 38617816 (+) | False | XLOC_015756 |
| TCONS_00031361 | mRNA | downstream | 325194 | 38608290 ~ 38709083 (+) | True | XLOC_015756 |
| TCONS_00031335 | other | upstream | 402678 | 37874771 ~ 37878304 (+) | False | XLOC_015735 |
| TCONS_00031331 | other | upstream | 444062 | 37836619 ~ 37836920 (+) | False | XLOC_015734 |
| TCONS_00031312 | other | upstream | 1079395 | 37192441 ~ 37201587 (+) | True | XLOC_015720 |
| TCONS_00031307 | other | upstream | 1137365 | 37140474 ~ 37143617 (+) | True | XLOC_015719 |
| TCONS_00031294 | other | upstream | 1527224 | 36753649 ~ 36753758 (+) | True | XLOC_015713 |
| TCONS_00031374 | other | downstream | 1773803 | 40056899 ~ 40057016 (+) | True | XLOC_015768 |
| TCONS_00031377 | other | downstream | 2752980 | 41036076 ~ 41036191 (+) | True | XLOC_015775 |
| TCONS_00031413 | other | downstream | 4140588 | 42423684 ~ 42423799 (+) | True | XLOC_015799 |
| TCONS_00031414 | other | downstream | 4303642 | 42586738 ~ 42587035 (+) | True | XLOC_015800 |
| TCONS_00031429 | other | downstream | 4715706 | 42998802 ~ 42998919 (+) | True | XLOC_015810 |
