RNA id: TU417861



Basic Information


Item Value
RNA id TU417861
length 255
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G367641
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 11766417 ~ 11766671 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtttgtctgtgtgttcaacgtttttctctcttcctctctctgtgtgcgtgtgtgtgtgtgtgtgtgtgtaagcctgCCTGCATGTTAGCAAATACGCACATGCCATAGTTCTGGTCCTCAGTCTCCTGCTGAACATTGAGCTCCTCCAGAGTAGCGTCTATGTCCAGCTGGTTGGTCTCCAGTTGTCTCAGCAGGGTCTCCCTCTgcagagaaagagaacgagataGAGGCAAGTCTATCAGTCAAGGCTAGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU417860 lncRNA upstream 182 11765765 ~ 11766235 (+) True G367640
TU417859 lncRNA upstream 4400 11761712 ~ 11762017 (+) True G367639
TU417857 lncRNA upstream 6019 11759956 ~ 11760398 (+) True G367637
TU417856 lncRNA upstream 6969 11759220 ~ 11759448 (+) True G367636
TU417855 lncRNA upstream 9757 11756414 ~ 11756660 (+) True G367635
TU417864 lncRNA downstream 2280 11768951 ~ 11769210 (+) True G367644
TU417866 lncRNA downstream 8039 11774710 ~ 11775006 (+) True G367646
TU417869 lncRNA downstream 10923 11777594 ~ 11777858 (+) True G367649
TU417870 lncRNA downstream 11291 11777962 ~ 11778302 (+) True G367650
TU417873 lncRNA downstream 18533 11785204 ~ 11785709 (+) True G367653
trnaa-agc-2 mRNA upstream 164885 11601460 ~ 11601532 (+) True trnaa-agc-2
XM_021601667.2 mRNA upstream 253155 11507689 ~ 11513262 (+) True LOC110523192
XR_005051640.1 mRNA upstream 259133 11502643 ~ 11507284 (+) True LOC110524952
XM_036976777.1 mRNA upstream 347484 11328647 ~ 11418933 (+) False LOC110523188
XM_021601680.2 mRNA downstream 37249 11803920 ~ 11808076 (+) True phax
XM_021601682.2 mRNA downstream 66238 11832909 ~ 11854832 (+) False lmnb1
XM_021601681.2 mRNA downstream 66305 11832976 ~ 11854832 (+) True lmnb1
XM_036979096.1 mRNA downstream 153067 11919738 ~ 11921477 (+) False LOC110523202
XM_036979093.1 mRNA downstream 153067 11919738 ~ 11922926 (+) False LOC110523202
TU417154 other upstream 337707 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 789265 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 1917263 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 2537186 9228838 ~ 9229231 (+) True G364850
TU412732 other upstream 2920301 8775332 ~ 8846116 (+) False cdc42se2
TU417909 other downstream 111658 11878329 ~ 11880035 (+) True G367684
TU418769 other downstream 1342025 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 1998576 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 2489132 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 2554433 14321104 ~ 14325895 (+) True G370382

Expression Profile