RNA id: TU418253


Basic Information

Item Value
RNA id TU418253
length 2153
lncRNA type read_through
GC content 0.45
exon number 2
gene id G367987
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12284239 ~ 12343442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTCATGAACATAAACCCTGGATCTCCAAGCATTACCGCAGGCACACACCTCAATTCCTAAACAGCTAACCTTAATTCCTAAAAATTCTGTCAATCAAAAAAAAATCAAAGATAAGCTTTGTAGTTTAGCTGAACAGAAATAAAACAAGTCAAATAGGCTCTCCCCAATGTGAGCATGCCTCAAAGTAAGAGCAAACTAGGATGAGGCAATAGGGGCACTGGGTTGTGAGGAGCAAATTTACTTGTGCCTGGGTTGTGAAATGTAATATGACAGCTGTGGCATTCCAGAAACACACCCCAGAACTTTTCACCCTGCTGAATACATCCCTGTTGTTCCTGATGTCTGAAAGCAGGAAGTTGCCCCACTGTGAATGATAGAGATTATATCACtgagtcgacatcacagcagcatAAAGGCAAGCACTCCTGCCTCTACCGCATTTCTCCCTTTCTACTTCTGAAAGTGCGGTCTGAAGATTTGTTCGACTGATCGTGTGTCACTGCCACACCATTACAGCTATGGTTTTTGTAGTGTCTTATGTCAGAAAAGCCCTTTCCACATCTCTTGCAATAATAAGGCCTAACTCCAGTGTGGACTTGCATGTGGGCTTTGACGTTGTTGGCTTGGCCAAAACCTCTCCCGCAAACGTCACATTTGAatggcttctctcccgtgtggacTCGCTCATGCCTTTTCAGATTGGTGTTGACTGCAAATGTCTTGTCACAATAACTGCATTTGAAGGGCTTTTCACCTGTATGGGTTCGCTCATGTCCTTCTAGAGCTTGCCTAAGAACAAATTTCTTTTCACAGTATTTACAAGCGTAAGGCTTCACTCCACTGTGAAGTCTCATGTGATAGTCAAAAGTATGTTTATAGGCAAAGGTCTTTCCGCAAATGGAACAAGAGTATTGCTTTTGTCCCGTGTGAATTCGTTGATGGTTTTTCAGAGTTAGCATGGAGCTGAAGCCGTTTAAACATATGTCACAACTAAATGGCTTTGTTGAGGTTCCCGGTCTCCTGGCGGTTCtcgttctctcttttctctttcgtaccctctgcttctctccttcAGCTGTGTGCCATTTTAGATGGTGTCGTCTCATTTGAAAATTGTACATAAAAGTCTTCCCACATAGGTCACACATAAATGGTTTGGTTGCTCCATGACGGTGCATGTGAGCTTTTAGGTCAGTGGACTGAAGGTAGCTTTTCCCACACACTTCACATTTGTACGGTCTCTCCCCTGTGTGAAGCACTTGGTGTCTCACAAGGTTTCCCTTATGGCCGAAAGCAGCTCCACATGTCTCACATGTAAATGCCTTCTCCCCTGTATGAACAACCATGTGGTTTTTGAGGCTGCTGCTTGTCATAAAACCCTTACCACACTCTGAACATGAATGCGGACGTACACCTGTATGTCGTCGCATATGAATACTAAGgccaccatgctgtctgtaactcTTTCCACATACAGCACAGGTGTATGGTTTTTCACCGGTGTGGATTCTCTCGTGCTCGATAAGCAGTTTCCTTGATGTGAAACCCTTGTCACAAGTCAGGCACTTGAACGGTCTCTCCACTGCATGAACAAGCTGATGTCGTTTCAGATCTTTCTTGGTAGAcaaaacatttccacaaactttgcAACTGAACGTTTTTTCTCTGTGACGCAACATGTGATGTTCAAGCTGCTTGGACATTCTGAATGTTTTGCCACACTGACCACAAGTGAATGGCCTCTCTTCTGTGTGAATTAGCATCTGATGTACCAGTGTGTGAATTAGCTTGTGAGCTTCCAGTGACCCCTTCCTGCTGAAAGTCTTTTCACAAACATCACACTTGAAGGGTCTTGTGTGAGTTAGCTTGTGTTGTACCAGTAGGTTCTTCCGGCTGAAGGTCTTCTCACAAACATCACACTTGAAGCATTTGGTTTCTTTGGATCGCATCCTTTTAGTAGTATTGCTGTTTTTCTGGCTTTCATGGCCGTCTCTCTCGTTGCTCCCTGGCAGAGCAGCTCTCATATGCTCAACGTTGGAGTCAGTGTCTCTTGGGGAGGGGTCTGTATTCAGTCCATCTGTGTCTCCCAGAGAGGAGTCATTCTCCAATGAAGACATCTCTGTGGGTTTGCTGCAAACCTTTGCAGGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418195 lncRNA upstream 18187 12265372 ~ 12266052 (+) True G367937
TU418193 lncRNA upstream 23002 12258346 ~ 12261237 (+) True slc12a2
TU418237 lncRNA upstream 41030 12242942 ~ 12243209 (+) True G367977
TU418235 lncRNA upstream 46930 12237047 ~ 12237309 (+) True G367975
TU418229 lncRNA upstream 58166 12225851 ~ 12226073 (+) True G367969
TU418315 lncRNA downstream 25336 12368778 ~ 12369051 (+) True G368039
TU418402 lncRNA downstream 168317 12511759 ~ 12512508 (+) True G368124
TU418419 lncRNA downstream 171573 12515015 ~ 12519164 (+) False G368126
TU418418 lncRNA downstream 172970 12516412 ~ 12518276 (+) True G368126
TU418513 lncRNA downstream 336799 12680241 ~ 12683744 (+) True G368216
XM_036976792.1 mRNA upstream 22997 12180768 ~ 12261242 (+) False slc12a2
XM_036976793.1 mRNA upstream 22997 12180768 ~ 12261242 (+) False slc12a2
XM_021601693.2 mRNA upstream 149671 12113703 ~ 12134568 (+) True LOC110523206
XM_036976790.1 mRNA upstream 190847 12056952 ~ 12093392 (+) False prrc1
XM_021601715.2 mRNA downstream 27468 12370910 ~ 12560586 (+) False LOC110523216
XM_021601716.2 mRNA downstream 27468 12370910 ~ 12560586 (+) False LOC110523216
XM_021601717.2 mRNA downstream 183464 12526906 ~ 12560586 (+) True LOC110523216
XM_036976809.1 mRNA downstream 231137 12574579 ~ 12592217 (+) True nr5a1b
XM_021601719.2 mRNA downstream 283630 12627072 ~ 12647403 (+) False psmb7
TU417909 other upstream 404204 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 855529 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 1307087 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2435085 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3055008 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 765254 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 1421805 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1912361 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1977662 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 2024230 14367672 ~ 14368161 (+) True G370414

Expression Profile