RNA id: TU418588


Basic Information

Item Value
RNA id TU418588
length 2269
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G368281
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 12782240 ~ 12784546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTGAAAGAACTGAAGGCTTAAGTACATCAAAAGGGGGCAACTGTACAAGAATGGaaggacaaacaaacaaactaaagACTGTGTAGTTAAAGGGATGTTGAATCCCAACAGCAGCTCTCCATGCATACAAGGATAAAGATAAGGTAAGAGCACCATCCTCATCCATAGGTAAAGGTAGTCACAGTCAAAAGGAAGGCAGCTTGATTCTCCATATCAGAAACACTCCTAGTCCTACCAGCTTCTAGTAGGCACCAAACAGGAAAACAACAGTCCAAAACGAGGAGGTACtacttgaatttgtccaataagaaacgctcatTTACGTTTTCCAttacaaaacgttttgctactGTGTGTCcgaatgaacacgacccaggtaaAGTTGGTTTATTTGCCAACCACACAAATCCCTGATTAGTTTCTCTGTACCAAAACCAATATTCAGACAGGTCCCCACAAGGAACAATTTTGTGGGGACAATTTCAATCAACCATGTTTTGTGCGAACAATTCCAAATAAGTATTTAGAAGTGGTCTTTAAGATTTTTTTAGATTAGGGGTGTAATTGTTAGATGTACCCATAAAGCATCTCAGTTCTAAGCACATTTCTTATATGTTATATCCTACATTGTGGGGACTTTGAGAATCAAAATCAGAGTGCTGGGTTTCAGCAGTAAGAACATAGAAAGACCTTCAGACTGAGGtaagtatggtgtgtgtgtgtgtgtgtgtgtgcgcgcttgTGAGTGTGCATGACTCCCCTCTTTGATGTGTAGAAGTGCATTTGGTACAATATACTGTAGAAGTGTATCTGGTACACTATACTGATATAAACTCTTATGTAGTGACGAATGAGCCAATATTCAAATAGACCGATAATATCTCAACATGAAAAGTTCATCCATATGTTACAgctatcaattcataaaccaaaCAGTGTGATGCTGGAAAATAGTTAGATATGTTGTAGCTACTTGTGTTGTGTATTCAAATGCGGACTGTAAAATAGTATCATTGCAATTCCATCAAGCAACGAGTCAGATATCAATATACATCATATCTCATTTCCGCATAGGACAGTTTATTGTTACAAAATATCAAAGTTGTAACCAACTATTACTGGTGTGTACTGCAAGCAATGACTGAGTCTAAAAGATAATGACCATGATATCtttatattaactttatcaaTGTAATTCTAATTCTCATCAATGCTATTTCTATTTCATCGATCAGTCCTCACTGTGTGCAGAGTGAATTGTAAAATAGAATTGCTTTCATTGCCATGTTGTAAGCAAACGTGGTTTGTCAGTGGGTCACCCATCCTTCAACCAAATCTTTCAAGAAATATGCCACCTAGATCAGACATCTATCCGATCAGGGATTCCTCAGTGTGATAAAATATATAAGGCACGCTAGAGTCTTCCGGATAACCTTGCTACAGTACTTTGTATCTGCATTTTACACTCTCCAATGTTTTTTCCAAATACATTTTCAGTTTCACAGTCCTTTCCCattgtctttttatttttttatatatttaaaaaaaaaaatctctaccTAGAAACAGAGTGGTCGGGGTGGTGGAGTGAGAATCTACATCTCGGTAGTATCAGTCAGCCAACGTGGAAAGGAAACAAAGATGAAAACAGAAAAAGTATCTTCAGCTCTTGATGAAATCAAGCCGACCGCTCTGTAAGGCTTTAGTTGCTACTCATACAAAGACTAGAAATAGACGGGGCAGTAATCTGAGGTCCACGGGGAATATCATGTATTTAAgtgtctctctcttcagtctcttAGTCTTTGAGTGACCTGGTGTGGTGTTGGATGGGTTTAGGGAGGGGTGGGGTGGTGTGGGATCGGTGACCTCAGAAGAGGTTGGTAAGTGTGGTCTGGGATGGGGTAGGTAATATCAGAAAAGGGTGGTAAGGGTGGTTATTTGATGGGGTGGGGTCGGTGACATCAGAATAGGCTGGTAAGGGTGGTCTGCGATGGGATGGGGTGGTGTTGGTAACATCAGAAGAGGCTGGTAAGGGTGGTCTGGGAAGGACTCATACTCATGGAGTCGTGGGGGTCCATGCCCCCCGGCACGGCGGTCAGTAGAGGGTTAACCGACGGAATAGAGGGGCTTGTCAGGTCCGTGAGGGTGGTGTGGGTGCTAGAAGGACTCATTGAGGCGTTGGAGAGCTCGGAGTGGGGGCCCGAAGGCGACCCCCCTGGTAGAGTGGACCCGTCCGACACCTTGTCCATCCCTGTGCTCTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU418513 lncRNA upstream 98496 12680241 ~ 12683744 (+) True G368216
TU418419 lncRNA upstream 263076 12515015 ~ 12519164 (+) False G368126
TU418418 lncRNA upstream 263964 12516412 ~ 12518276 (+) True G368126
TU418402 lncRNA upstream 269732 12511759 ~ 12512508 (+) True G368124
TU418315 lncRNA upstream 413189 12368778 ~ 12369051 (+) True G368039
TU418672 lncRNA downstream 119624 12904170 ~ 12904418 (+) True G368355
TU418673 lncRNA downstream 120361 12904907 ~ 12905339 (+) True G368356
TU418705 lncRNA downstream 180504 12965050 ~ 12970896 (+) True G368387
TU418731 lncRNA downstream 250226 13034772 ~ 13034998 (+) True G368413
TU418751 lncRNA downstream 267961 13052507 ~ 13052933 (+) True G368422
XM_021601718.2 mRNA upstream 134834 12627072 ~ 12647406 (+) True psmb7
XM_021601719.2 mRNA upstream 134837 12627072 ~ 12647403 (+) False psmb7
XM_036976809.1 mRNA upstream 190023 12574579 ~ 12592217 (+) True nr5a1b
XM_021601716.2 mRNA upstream 221654 12370910 ~ 12560586 (+) False LOC110523216
XM_036976817.1 mRNA downstream 18286 12802832 ~ 12978339 (+) False LOC110523223
XM_036976815.1 mRNA downstream 18287 12802833 ~ 12978339 (+) False LOC110523223
XM_036976818.1 mRNA downstream 18287 12802833 ~ 12978339 (+) False LOC110523223
XM_036976816.1 mRNA downstream 18288 12802834 ~ 12978339 (+) False LOC110523223
XM_036976819.1 mRNA downstream 18288 12802834 ~ 12978339 (+) True LOC110523223
TU417909 other upstream 902205 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 1353530 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 1805088 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 2933086 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3553009 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 324150 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 980701 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1471257 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1536558 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1583126 14367672 ~ 14368161 (+) True G370414

Expression Profile