RNA id: TU418753



Basic Information


Item Value
RNA id TU418753
length 542
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G368424
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13055357 ~ 13055898 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CtgtagggacttgcttccattcagccatgagcatAAGTGctgtcgggcactgatgttaggcaATTAGGCCTGGTTTGCAGTCAacattccaattaatcccaaaggtgttcaattgggttgaggtcagggctctgtgcaggccagtcaagttcttccacattgaTATCgagaaaccatttctgtatggacctcgctttgtgcatgggggcattgtcatgctgaaacaggaaaggaccttccccaaactgtttccacaatgTTGAAAgcatagaatcgtctagaatgtaattgtatgctgtagcgttaagatttccctccactggaattaaggggcctaacccgaaccatgaaaaacagcgccagatcattattcctcctctaccagACTTTActatgcactatgcattggggcaggtagcgttctcctggcatccgccaaacccagattcgtctgtcgtactgccagatgatgaagtgtgattcatcactccagagaatgcgtttccactgctccagagtccaatggcggtgagctttacacc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU418751 lncRNA upstream 2424 13052507 ~ 13052933 (+) True G368422
TU418731 lncRNA upstream 20359 13034772 ~ 13034998 (+) True G368413
TU418705 lncRNA upstream 84461 12965050 ~ 12970896 (+) True G368387
TU418673 lncRNA upstream 150018 12904907 ~ 12905339 (+) True G368356
TU418672 lncRNA upstream 150939 12904170 ~ 12904418 (+) True G368355
TU418761 lncRNA downstream 4900 13060798 ~ 13065748 (+) True G368432
TU418770 lncRNA downstream 54155 13110053 ~ 13110260 (+) True G368441
TU418774 lncRNA downstream 59324 13115222 ~ 13115465 (+) True G368445
TU418782 lncRNA downstream 72762 13128660 ~ 13129119 (+) False G368450
TU418779 lncRNA downstream 72874 13128772 ~ 13129119 (+) False G368450
XM_036976817.1 mRNA upstream 77018 12802832 ~ 12978339 (+) False LOC110523223
XM_036976822.1 mRNA downstream 33829 13089727 ~ 13107713 (+) True ptpa
XM_021601744.2 mRNA downstream 484072 13539970 ~ 13543920 (+) False ntmt1
XM_021601746.2 mRNA downstream 484072 13539970 ~ 13543920 (+) False ntmt1
XM_021601749.2 mRNA downstream 484072 13539970 ~ 13543920 (+) False ntmt1
XM_021601748.2 mRNA downstream 484073 13539971 ~ 13543920 (+) False ntmt1
TU417909 other upstream 1175322 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 1626647 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2078205 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3206203 9848703 ~ 9849154 (+) True G365197
TU414760 other upstream 3826126 9228838 ~ 9229231 (+) True G364850
TU418769 other downstream 52798 13108696 ~ 13109134 (+) True G368440
TU420256 other downstream 709349 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1199905 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1265206 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1311774 14367672 ~ 14368161 (+) True G370414

Expression Profile