RNA id: TU418770



Basic Information


Item Value
RNA id TU418770
length 208
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G368441
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13110053 ~ 13110260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aacaggcagtggctcaggtggttgttgtccttgatgatctttatggccttcctgtgacatctggtggTGTAGGTGTGCTGGAGGGCAGggagtttgcccccggtgatgccttgtgcagacctcactaccctctggagggccttacggttgtgggcggagcagctgccgtaccagacggggatacagcccgacaggatgctctcgattc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU418761 lncRNA upstream 44305 13060798 ~ 13065748 (+) True G368432
TU418753 lncRNA upstream 54155 13055357 ~ 13055898 (+) True G368424
TU418751 lncRNA upstream 57120 13052507 ~ 13052933 (+) True G368422
TU418731 lncRNA upstream 75055 13034772 ~ 13034998 (+) True G368413
TU418705 lncRNA upstream 139157 12965050 ~ 12970896 (+) True G368387
TU418774 lncRNA downstream 4962 13115222 ~ 13115465 (+) True G368445
TU418782 lncRNA downstream 18400 13128660 ~ 13129119 (+) False G368450
TU418779 lncRNA downstream 18512 13128772 ~ 13129119 (+) False G368450
TU418783 lncRNA downstream 18512 13128772 ~ 13129188 (+) True G368450
TU418785 lncRNA downstream 24096 13134356 ~ 13134770 (+) True G368451
XM_036976822.1 mRNA upstream 2340 13089727 ~ 13107713 (+) True ptpa
XM_036976817.1 mRNA upstream 131714 12802832 ~ 12978339 (+) False LOC110523223
XM_021601744.2 mRNA downstream 429710 13539970 ~ 13543920 (+) False ntmt1
XM_021601746.2 mRNA downstream 429710 13539970 ~ 13543920 (+) False ntmt1
XM_021601749.2 mRNA downstream 429710 13539970 ~ 13543920 (+) False ntmt1
XM_021601748.2 mRNA downstream 429711 13539971 ~ 13543920 (+) False ntmt1
XM_021601743.2 mRNA downstream 429715 13539975 ~ 13543920 (+) False ntmt1
TU418769 other upstream 919 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1230018 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 1681343 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2132901 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3260899 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 654987 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1145543 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1210844 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1257412 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1694401 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile