RNA id: TU419651



Basic Information


Item Value
RNA id TU419651
length 225
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G369233
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13190219 ~ 13190443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CGAGaatgagaaagcgagagagagccaTCTATAGGGAAAGACAGAAACAAAGATAGGAGAAtagaattaaaaaataataataatacaatacagaatataataaaaaaaatacatagacAATTGAACAGcaataaattaaattgatttaATTTATGTTTCAACAACTAATACCCTACAAATTCATTTGATGCTGGTTTCTCAGACACAGATTCCACCCAGTCCTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU419648 lncRNA upstream 2093 13187923 ~ 13188126 (+) True G369230
TU418802 lncRNA upstream 23064 13166821 ~ 13167155 (+) True G368467
TU418790 lncRNA upstream 48920 13140813 ~ 13141299 (+) True G368456
TU418785 lncRNA upstream 55449 13134356 ~ 13134770 (+) True G368451
TU418783 lncRNA upstream 61031 13128772 ~ 13129188 (+) True G368450
TU419667 lncRNA downstream 15296 13205739 ~ 13205944 (+) True G369249
TU419680 lncRNA downstream 27873 13218316 ~ 13218539 (+) True G369262
TU419681 lncRNA downstream 29019 13219462 ~ 13219768 (+) True G369263
TU419682 lncRNA downstream 29778 13220221 ~ 13220566 (+) True G369264
TU419686 lncRNA downstream 33894 13224337 ~ 13224541 (+) True G369268
XM_036976822.1 mRNA upstream 82506 13089727 ~ 13107713 (+) True ptpa
XM_036976815.1 mRNA upstream 211880 12802833 ~ 12978339 (+) False LOC110523223
XM_021601744.2 mRNA downstream 349527 13539970 ~ 13543920 (+) False ntmt1
XM_021601746.2 mRNA downstream 349527 13539970 ~ 13543920 (+) False ntmt1
XM_021601749.2 mRNA downstream 349527 13539970 ~ 13543920 (+) False ntmt1
XM_021601748.2 mRNA downstream 349528 13539971 ~ 13543920 (+) False ntmt1
XM_021601743.2 mRNA downstream 349532 13539975 ~ 13543920 (+) False ntmt1
TU418769 other upstream 81085 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1310184 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 1761509 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2213067 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3341065 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 574804 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 1065360 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 1130661 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 1177229 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1614218 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile