RNA id: TU420051


Basic Information

Item Value
RNA id TU420051
length 557
lncRNA type antisense_over
GC content 0.59
exon number 4
gene id G369584
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13590579 ~ 13594647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCATCTCATTGTCCACTTTTATTACGAGTAAACCTGGCAAACGTGCTCAAcccactccccctcctcctcgctctctctcgctagtCCTCACCGTTTGTTGTCCAGTAGCAGGTTGTTGATGCGGTTAGCGATGCCCGTCTCGGCCTGGCGGACCTTACCCAGAATCCTCTGCCTCTCAACCTCCTGGAACCTCTGCTGCACTGACACGCCTAGCTCCAGACgctcctgttcCTGTCTGACAGACAGCAGGATGTTCTCCTTGTGGGAGTTGTTCATGAGGATGAGCTGGTGATGCTCCTTCTGCTTCTCTTCCAGCTGACGCTCAAATGCCAGTTTCTCCTGGTGCttctgctcCCTGCCAGGCCCCCTCCAGGCTGTCCACATCGTCCGGGCTCTGCTTCCCTGAGTCACTCTCCAGCACGGGCAGCAGGAACTGAGACGAGGGGCAGTACTCCTCCCCCAGCTCAGTGCAGAGGAACCGTTGGATGTCCTCAGTCCCCATGGTGCACACCGAGGCAGGGGGGTAGGACATGAGAGCAGCGTCCAGGGTCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420040 lncRNA upstream 8482 13580343 ~ 13582939 (+) True fkbp15a
TU420047 lncRNA upstream 21911 13569180 ~ 13569510 (+) True G369580
TU420017 lncRNA upstream 70493 13520714 ~ 13520928 (+) True G369551
TU420016 lncRNA upstream 74495 13516723 ~ 13516926 (+) True G369550
TU420011 lncRNA upstream 76868 13514274 ~ 13514553 (+) True G369545
TU420096 lncRNA downstream 65115 13659762 ~ 13660150 (+) True G369619
TU420205 lncRNA downstream 105757 13700404 ~ 13700664 (+) True G369719
TU420206 lncRNA downstream 108269 13702916 ~ 13703134 (+) True G369720
TU420207 lncRNA downstream 108524 13703171 ~ 13703492 (+) True G369721
TU420208 lncRNA downstream 108901 13703548 ~ 13703868 (+) True G369722
XM_036976825.1 mRNA upstream 10958 13557754 ~ 13580463 (+) False fkbp15a
XM_021601750.2 mRNA downstream 8562 13603209 ~ 13606051 (+) False rpl12
XM_021601752.2 mRNA downstream 8619 13603266 ~ 13606051 (+) True rpl12
XR_005051962.1 mRNA downstream 9682 13604329 ~ 13604454 (+) True LOC118964769
XR_005051960.1 mRNA downstream 10097 13604744 ~ 13604869 (+) True LOC118964767
XR_005051959.1 mRNA downstream 10677 13605324 ~ 13605449 (+) True LOC118964766
TU418769 other upstream 482287 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1711386 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2162711 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2614269 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3742267 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 170600 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 661156 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 726457 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 773025 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1210014 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile