RNA id: TCONS_00031371


Basic Information

Item Value
RNA id TCONS_00031371
length 2094
lncRNA type antisense
GC content 0.36
exon number 2
gene id XLOC_015764
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 39059635 ~ 39070308 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tACAAAGTTGTGGAatccaactttttttttggtggggggtGGGACCAGAGCGGAGTATGAACAACAGTTTATTGAACAGGATGGCAGGTAAATAACTGAATATGTCTATTGCTGGACACGTGTAGAAGGGACCGGAAGAAGAAATGAAGCTAGGTACTGAGGGACCGGGGAGCAAACAACCAGATGAGACCAGGAGGGAACCACAATAGGAGGAAGAGACACAGACACTAAAGATCATAGAAAACCAAGACTGAGCTCGACGGATCTCCGTGGCGCTGATCTCATTGTGAACCCACTCCCGAACCAGGAAAATGCTTGGCCGGTGCTTGGACAACAAATCAGACTCATGTATAGCACGATCAGGCTGAAGGCTGCCACGGCTCACGCAGACCAGTCCAAATCGGCCCACAACCTCCTCGATGTGCTCATCCGTCCACAGACCAGGCACTTTAAAGGAGTCCATGAAATCAGCTCCACACAACAGCTTCAACTGAGGAacatctgaagaaaaaaaacagtaagaTTACTAGTTGTGTATAAGGTAACAGGAGTCATTAACCCTTGAGCGCTGTTGggaatgttttcatccaccttGTGGGGATGTTGAGTCttaattttgacacatattttgggaaaatgattagaaatttttaaaaatgtcaacaatacactctgggtaaATTTACCACCCTTTAtgttaacagaaaaaaaacacacattttacctcttcccaacagggaaaaccaccaacaatcaagaatacatgattatttggtgtcatgactttgcaatcaaaaaagtgtaagtataatggaagtcaaaggggccaaaacagccaccaacataaagaaagggtagtcaatttgcccatattgttgagtttttgaaaatttcaaagcatttcccCATAGTATGAGTCAAAATACGGGTCACCAAAAATCATTGCATTTTGCTGAAATACATAACAAAAGGGAACAAAACTTGAAtggtacacaagggttaaattaaAGTTAACAGTTAACAATGCTTTTTTACTTTTGGAATGTTAACCCTTGTATTGTTCAAACTTACTACCTATTCGTTATGCTTTCTTGAGAGTTAGCGATTTTCTTAGCTGGGAAGAGGTAAATGATCATTAGTTTGCACCATTTGCCCTTTAGATTTAGCCCTTTTTAAGCCAGTGCAAAAAAGTTTCTGGTTCTTATTTGGAGCTCTATgaagtataacagcaaattatagtgtacatgcataaatacactcACTAAATTACTCTGTTCTGTGAGATGAGgtgcttattttaattttttcagacatatcaaggtactgtaagtgtgcaaaggtctctCTCAGATTGCGATCAAAAATGTGAttatgatggaagtcaatggagcaaaaacagaCCCTAACATAACGAATGGGTTGTAAATTTGCACATAGAGTAAtgttgagttgttgttttttttattcaaaacattttcccaaaatgtatgtcaaaataagGAGTCACTAAAAATctttccatttgctgaaacacagagaaagttgtggcttaattaagactcaaaatcacatCACCCCAAAGTGGATggaaacatccccaacagcacacaaaggtTATTCATTGTaaagatgtgtgtatgtgtgctttaAAACATGAGACCtgacttttttttctgtaatataaaGGCTACAACATGCTAACTAATCTATAGTATGTTGTTTTGCCTGTTTATAACATCTTCTGATGTTTAAAGCCTGTTTAGTTAAGCAATGCTGTTCTtatgctgtatttatttattataattatcagtCATTGTCAGATGATTTCAGTCATAGCTATGCAAAGATTTTATTTCAACAACAGTTTCGTTTGTTATTAAACTTTCTTGTTATTAGCTTAAATCTGTATTTAACCTCAGAAAATCTTCACGTAAAAAAGAGGCGCTTAAGTCAGAATTTGTGGTGactgtgttttaaaattaaattattatgatCCTTATTTATACCTGGTTTAAACATTTGGAAAttatatacagttttattttttatttttaaaggatgTTTAGAAGTAATAAAATGCAATCAGTTAGATGT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000156015

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033289 lncRNA upstream 7406 39051887 ~ 39052229 (+) True XLOC_015763
TCONS_00031370 lncRNA upstream 13451 39036182 ~ 39046184 (+) True XLOC_015762
TCONS_00031365 lncRNA upstream 206979 38846743 ~ 38852656 (+) False XLOC_015758
TCONS_00033618 lncRNA upstream 318080 38739785 ~ 38741555 (+) True XLOC_015757
TCONS_00033288 lncRNA upstream 637402 38416017 ~ 38422233 (+) True XLOC_015755
TCONS_00033619 lncRNA downstream 715439 39785747 ~ 39792446 (+) True XLOC_015767
TCONS_00033620 lncRNA downstream 1148256 40218564 ~ 40222006 (+) True XLOC_015770
TCONS_00033621 lncRNA downstream 1194317 40264625 ~ 40274510 (+) False XLOC_015771
TCONS_00033291 lncRNA downstream 1194317 40264625 ~ 40274510 (+) False XLOC_015771
TCONS_00033290 lncRNA downstream 1194484 40264792 ~ 40274512 (+) True XLOC_015771
TCONS_00031369 mRNA upstream 31583 39021282 ~ 39028052 (+) True XLOC_015761
TCONS_00031368 mRNA upstream 82337 38924975 ~ 38977298 (+) True XLOC_015760
TCONS_00031367 mRNA upstream 150234 38892631 ~ 38909401 (+) True XLOC_015759
TCONS_00031366 mRNA upstream 171826 38881165 ~ 38887809 (+) True XLOC_015758
TCONS_00031364 mRNA upstream 196924 38804223 ~ 38862711 (+) False XLOC_015758
TCONS_00031372 mRNA downstream 38031 39108339 ~ 39555667 (+) True XLOC_015765
TCONS_00031373 mRNA downstream 548643 39618951 ~ 39621103 (+) True XLOC_015766
TCONS_00031375 mRNA downstream 1111325 40181633 ~ 40184687 (+) True XLOC_015769
TCONS_00031376 mRNA downstream 1224005 40294313 ~ 40514151 (+) True XLOC_015772
TCONS_00031379 mRNA downstream 2453930 41524238 ~ 41530598 (+) False XLOC_015777
TCONS_00031335 other upstream 1181331 37874771 ~ 37878304 (+) False XLOC_015735
TCONS_00031331 other upstream 1222715 37836619 ~ 37836920 (+) False XLOC_015734
TCONS_00031312 other upstream 1858048 37192441 ~ 37201587 (+) True XLOC_015720
TCONS_00031307 other upstream 1916018 37140474 ~ 37143617 (+) True XLOC_015719
TCONS_00031294 other upstream 2305877 36753649 ~ 36753758 (+) True XLOC_015713
TCONS_00031374 other downstream 986591 40056899 ~ 40057016 (+) True XLOC_015768
TCONS_00031377 other downstream 1965768 41036076 ~ 41036191 (+) True XLOC_015775
TCONS_00031413 other downstream 3353376 42423684 ~ 42423799 (+) True XLOC_015799
TCONS_00031414 other downstream 3516430 42586738 ~ 42587035 (+) True XLOC_015800
TCONS_00031429 other downstream 3928494 42998802 ~ 42998919 (+) True XLOC_015810

Expression Profile

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