RNA id: TU420205


Basic Information

Item Value
RNA id TU420205
length 261
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G369719
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13700404 ~ 13700664 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacactacagtaaataAAAACATGAAGAGGGTATATTAAGGGTAGAGGATATATTGAAGGTAGTTTGATGGTTTTCAAGTCCACAGATCAATGCAAAAGCTTCGCTAAAtagcttcctttccttgtctcctctctttcatgaACACTGACCTGCCAGACACTTGAAAGGACTAAGCAACATCTAATTTCTTGTGACTTGCTGCTAACAAATGTTTTGCAAACTTGTTGCAGACATCAGGGAACTGAGACAAAGGAAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420096 lncRNA upstream 40254 13659762 ~ 13660150 (+) True G369619
TU420051 lncRNA upstream 105757 13591421 ~ 13594647 (+) True G369584
TU420052 lncRNA upstream 108435 13590579 ~ 13591969 (+) False G369584
TU420040 lncRNA upstream 117465 13580343 ~ 13582939 (+) True fkbp15a
TU420047 lncRNA upstream 130894 13569180 ~ 13569510 (+) True G369580
TU420206 lncRNA downstream 2252 13702916 ~ 13703134 (+) True G369720
TU420207 lncRNA downstream 2507 13703171 ~ 13703492 (+) True G369721
TU420208 lncRNA downstream 2884 13703548 ~ 13703868 (+) True G369722
TU420223 lncRNA downstream 12475 13713139 ~ 13713423 (+) True G369730
TU420227 lncRNA downstream 15120 13715784 ~ 13716027 (+) True G369734
XM_021601755.2 mRNA upstream 15264 13668173 ~ 13685140 (+) True lmo4a
XM_036976828.1 mRNA upstream 48569 13647485 ~ 13651835 (+) True ccn1l1
XR_005051642.1 mRNA upstream 56276 13613034 ~ 13644128 (+) True LOC118964562
XR_005051961.1 mRNA upstream 94583 13605700 ~ 13605821 (+) True LOC118964768
XR_005051959.1 mRNA upstream 94955 13605324 ~ 13605449 (+) True LOC118964766
XM_021601761.2 mRNA downstream 106121 13806785 ~ 13818030 (+) True LOC110523240
XM_021601762.2 mRNA downstream 117663 13818327 ~ 13850807 (+) True gpr107
XM_036976834.1 mRNA downstream 159788 13860452 ~ 13882141 (+) False ncs1a
XR_005051643.1 mRNA downstream 159789 13860453 ~ 13879911 (+) False ncs1a
XM_036976833.1 mRNA downstream 159789 13860453 ~ 13882141 (+) False ncs1a
TU418769 other upstream 591270 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1820369 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2271694 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2723252 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3851250 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 64583 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 555139 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 620440 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 667008 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1103997 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile