RNA id: TU420207


Basic Information

Item Value
RNA id TU420207
length 322
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G369721
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13703171 ~ 13703492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggttgttgtcctagcaccacacggccaggtctctgacctcctccctataggctgtcttgtcgttgtcggtgatcaggcctaccactgttgtgtcatctgcaaatgtaatgatggtgttggagtcgtgcctggccgtgcagtcatgagtgaagagggagtacaggaggggactgagcacgcacccctgaggggctcttgtgttgaggatcagtgtggcggatgtgttgttacctatccttaccacctgggggtggcccgtcaggaagttcaggatccagttgcagagggatgtgtttagtcccaggatccttagatTATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420206 lncRNA upstream 37 13702916 ~ 13703134 (+) True G369720
TU420205 lncRNA upstream 2507 13700404 ~ 13700664 (+) True G369719
TU420096 lncRNA upstream 43021 13659762 ~ 13660150 (+) True G369619
TU420051 lncRNA upstream 108524 13591421 ~ 13594647 (+) True G369584
TU420052 lncRNA upstream 111202 13590579 ~ 13591969 (+) False G369584
TU420208 lncRNA downstream 56 13703548 ~ 13703868 (+) True G369722
TU420223 lncRNA downstream 9647 13713139 ~ 13713423 (+) True G369730
TU420227 lncRNA downstream 12292 13715784 ~ 13716027 (+) True G369734
TU420234 lncRNA downstream 18591 13722083 ~ 13722442 (+) True G369741
TU420235 lncRNA downstream 20194 13723686 ~ 13723950 (+) True G369742
XM_021601755.2 mRNA upstream 18031 13668173 ~ 13685140 (+) True lmo4a
XM_036976828.1 mRNA upstream 51336 13647485 ~ 13651835 (+) True ccn1l1
XR_005051642.1 mRNA upstream 59043 13613034 ~ 13644128 (+) True LOC118964562
XR_005051961.1 mRNA upstream 97350 13605700 ~ 13605821 (+) True LOC118964768
XR_005051959.1 mRNA upstream 97722 13605324 ~ 13605449 (+) True LOC118964766
XM_021601761.2 mRNA downstream 103293 13806785 ~ 13818030 (+) True LOC110523240
XM_021601762.2 mRNA downstream 114835 13818327 ~ 13850807 (+) True gpr107
XM_036976834.1 mRNA downstream 156960 13860452 ~ 13882141 (+) False ncs1a
XR_005051643.1 mRNA downstream 156961 13860453 ~ 13879911 (+) False ncs1a
XM_036976833.1 mRNA downstream 156961 13860453 ~ 13882141 (+) False ncs1a
TU418769 other upstream 594037 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1823136 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2274461 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2726019 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3854017 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 61755 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 552311 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 617612 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 664180 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1101169 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile