RNA id: TU420223


Basic Information

Item Value
RNA id TU420223
length 285
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G369730
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 13713139 ~ 13713423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcactttattgcatgacataagtatttgatacataagaaaagcagaacttaatatttggtacacaaacctttgtttgcaattacagagatcatacgtttcctgtagttcttgaccaggtttgcacacactgcagcaggaattttgtcccactcctccatacagaccttctccagatccttcaggtttcggggctgtcgctgggcaatacggactttcagctccctccaaagattttcttttgggttcaggtctggagactggctaggccactccaggaccttgct

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420208 lncRNA upstream 9271 13703548 ~ 13703868 (+) True G369722
TU420207 lncRNA upstream 9647 13703171 ~ 13703492 (+) True G369721
TU420206 lncRNA upstream 10005 13702916 ~ 13703134 (+) True G369720
TU420205 lncRNA upstream 12475 13700404 ~ 13700664 (+) True G369719
TU420096 lncRNA upstream 52989 13659762 ~ 13660150 (+) True G369619
TU420227 lncRNA downstream 2361 13715784 ~ 13716027 (+) True G369734
TU420234 lncRNA downstream 8660 13722083 ~ 13722442 (+) True G369741
TU420235 lncRNA downstream 10263 13723686 ~ 13723950 (+) True G369742
TU420263 lncRNA downstream 68846 13782269 ~ 13797757 (+) True G369770
TU420290 lncRNA downstream 86932 13800355 ~ 13854169 (+) True G369785
XM_021601755.2 mRNA upstream 27999 13668173 ~ 13685140 (+) True lmo4a
XM_036976828.1 mRNA upstream 61304 13647485 ~ 13651835 (+) True ccn1l1
XR_005051642.1 mRNA upstream 69011 13613034 ~ 13644128 (+) True LOC118964562
XR_005051961.1 mRNA upstream 107318 13605700 ~ 13605821 (+) True LOC118964768
XR_005051959.1 mRNA upstream 107690 13605324 ~ 13605449 (+) True LOC118964766
XM_021601761.2 mRNA downstream 93362 13806785 ~ 13818030 (+) True LOC110523240
XM_021601762.2 mRNA downstream 104904 13818327 ~ 13850807 (+) True gpr107
XM_036976834.1 mRNA downstream 147029 13860452 ~ 13882141 (+) False ncs1a
XR_005051643.1 mRNA downstream 147030 13860453 ~ 13879911 (+) False ncs1a
XM_036976833.1 mRNA downstream 147030 13860453 ~ 13882141 (+) False ncs1a
TU418769 other upstream 604005 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 1833104 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2284429 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 2735987 10976682 ~ 10977152 (+) True G366748
TU415150 other upstream 3863985 9848703 ~ 9849154 (+) True G365197
TU420256 other downstream 51824 13765247 ~ 13769296 (+) True G369763
TU420927 other downstream 542380 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 607681 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 654249 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 1091238 14804661 ~ 14805471 (+) True LOC118964542

Expression Profile