RNA id: TU420495


Basic Information

Item Value
RNA id TU420495
length 1688
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G369972
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14143417 ~ 14145104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGATGGTATTAGTCTACAGTCTAACACTATTTCAGTAGCAAGATGGTATTAGTCTACATTCTAACACAATATCAGTAGCAAGATGGTATGTTCCTACTGAAAAATTGCCTAGACAGGAATTGGTACAAATTGACAGTCTGTGACTAGCGATGGTTCAATGTGGCTTTATTGTACTAAAGTGAGGTAGTAAGAGATACTGTGCTGAGTATTTTGACACTGAATGAAATGGGAACACTCCTAGTTCAAACAGCTTGGCTTGGTCGATCAGTGTGTCTATAATCATGTCTTgatcttaaaggcccagtgcagtcaaaaacttgatttccctgtgttttacaTATTTCCACACCGAGGTTGGATTCAtactgaaattgtgaaaattatgataatgcccttttagtgtaagagctgtttgaaaatacttcctgaaatttcagcctgttttggtgggagggagttttggccttccatggtgacatcaccatgtggtGAATTGGTTAATAAAgatttccaaacctctctgccaataacagctagttttcagttcccCCTCCCTACTCCCCTAGTCCCTAGCCTCCCTGACAGTCTTAGCCAAgatcttgcttgagaaattgctctttgctaagaagctatttttttttcttttgaccattttaatttcaaacaatcacagtaaggtacttaattgttacctagAAATAATTTGATACTTGTGTGGGGGAAAAAAACCAAGCTGCATTGAACCTTTTAATGAATGTATATAAACAGTGACAAATCCCCCCCCTTGAAGATTCAGTAATGACAAAAAGGAAAGTCTTGTCTTCCTGTGATTCACAAACGTTTGTTGTCAATGATGAATGGTTTATGGTTCTCTAACATTTTCTCGTTCTTGTTTTGCTCTATCACAATTTTTTTCCTTTCCTTTTTTCCATTTTTCCATGGCTCTTGCCTTTCTCccacctcttcctcccctccttgcCCTGTGATTTTTGAGGGCTTGTCCAGGATAGGGCTAGCAGCAAGACAGTAGGCCCCGTGCCACAGTCCGCCTGCCAACCGTCATGCACTGCCATTCTCCCTCTTATCATATCGCTCTGTTTCTCATCCAGCAGACATTCAATTTGTGGACCACAAACTATCTGTTTTACAGCTATATTGAGACTGTTTTAGAAAGCAGCTCACTGCCTCTGGTCTCATCTCTGCCAACCGTTTGACGGTAGACAGCAAATCCTATGTGGCAAAAAGCTACTATAATTGTGGACTTGAGAATAACAGGGCTAGATAGGGAGAATGCATACTCATCATTAAATATAAGAATATATTTTGTAATCCTGCATGTCGATGGCTTTTTCTGTAACATTTATCCTCCGTTGAATTTAACATGGCTGAACAGTCTTTTGTCGTTGTCTGTTTGTTATTCGCACCACATTGTCCTTGGTGTCAGATTAATGTTTGTCATGCCACTGCTACACAGGGCaacaatgtaaattgtccagcGTGTTGTGCTCTGATTTGACATATCCTCCATTGTCTTAAAAATCCTTAACGTCTTTGACTATGTGGAAGGACAACATTGCATTGTTGCCAGTGGCGATTATATAAATCTGTATAGTGATTACATCAGGAATTAGACAATGCTATGTGTAGCCATATTCTTCTCTAAGGGTTCTTCTTTGTGTATTTTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420504 lncRNA upstream 4790 14137903 ~ 14138627 (+) True G369976
TU420444 lncRNA upstream 53446 14074753 ~ 14089971 (+) True G369922
TU420475 lncRNA upstream 81104 14062086 ~ 14062313 (+) True G369953
TU420474 lncRNA upstream 81481 14061718 ~ 14061936 (+) True G369952
TU420472 lncRNA upstream 82704 14060215 ~ 14060713 (+) True G369950
TU420501 lncRNA downstream 877 14145981 ~ 14147544 (+) False G369974
TU420502 lncRNA downstream 1688 14146792 ~ 14147544 (+) True G369974
TU420500 lncRNA downstream 81081 14226185 ~ 14231585 (+) True LOC110523253
TU420551 lncRNA downstream 99155 14244259 ~ 14251198 (+) True G370022
TU421013 lncRNA downstream 164918 14310022 ~ 14310505 (+) True G370442
XM_036976843.1 mRNA upstream 951 14128559 ~ 14142466 (+) False LOC110523252
XM_036976841.1 mRNA upstream 951 14128792 ~ 14142466 (+) False LOC110523252
XM_036976844.1 mRNA upstream 951 14128812 ~ 14142466 (+) True LOC110523252
NM_001165172.1 mRNA upstream 153190 13986695 ~ 13990227 (+) True arpc5l
XM_036976833.1 mRNA upstream 261276 13860453 ~ 13882141 (+) False ncs1a
XM_036976848.1 mRNA downstream 3328 14148432 ~ 14229308 (+) False LOC110523253
XM_036976847.1 mRNA downstream 27459 14172563 ~ 14229308 (+) False LOC110523253
XM_036976845.1 mRNA downstream 30001 14175105 ~ 14229308 (+) False LOC110523253
XM_036976846.1 mRNA downstream 30336 14175440 ~ 14229308 (+) False LOC110523253
XM_021601785.2 mRNA downstream 127201 14272305 ~ 14308719 (+) True mmp11b
TU420256 other upstream 374121 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1034283 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2263382 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2714707 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 3166265 10976682 ~ 10977152 (+) True G366748
TU420927 other downstream 110699 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 176000 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 222568 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 659557 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 903074 15048178 ~ 15053556 (+) True LOC110519479

Expression Profile