RNA id: TU420871


Basic Information

Item Value
RNA id TU420871
length 4900
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G370315
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14226627 ~ 14231588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTTTTGACACACAGTAAGTTTTTATTAGGTGTTTTTTCTCCAACATTAAACACAATAAGGGGGAAAGCAATATCAAAACTGACCATTATACAAAAACGACAGAGGATTGATGTAAAGCAACCAAAGTCAACGGGATATGGAGACAAGTTGATCCACAAATACTGTGGTATAAACTTcgcatatatatttatatttacatatatattaATTTGTAATTGCATGGGAAAAGAAACAATGTACAATGCTACAAAAAAGTATTTACAAGTTAATAAATAAAGCCAGCAAACACAAAGCAGGAAAATGAAGAAAATAATCTAAAGTACAAAGGACATTGAGTCTTTTaatatacaaaaaatacaaaaagaaCATAGAAAAAACATTGAACAGGTAATCGTTAGAAAGTTCAGAGCCTTTGACAGTGACGGAGAGCGATGGCACAAAGGTTTTAAGGATGATCATTGTGAGAGGCAAGGTGACATATTCCTGATCAATCTGGGTTTCTGAGAGGGACTAACTTAGAGGGAGAGGTGCAGTCTTTGGCCCTTCATTTACAATAGACacagaagagtgtgtgtgtgtgtgtcacttacacacacagactAGCATTTGTGAAACCTGAAATGCTGACATCTTTTTGTCAGATCCCCCTCTCCAACCTCTGATATATACACtgtgtgtacaaaatattaagaacacctgctctttccatgacagactgaccttgtgaatccagttgaaagctccacttcaaatcagtgtagatgaaggggaggagacaggttaaagaagcatTTTTAAGCATTGACACAATTGAGACATTTATTGTTTATGTGTGCcagtcagagggtgaatgggcaagacaaaatatttaagtgcctttgaacagggtatggtagtatgtgccaggtgcatcggtttgagtgtgtcaaaaaactgcaacgctgttgggtttttcaagctcaacagtctcctgtgtgtataaagaatggtccaccaccagaaggacatccagccaacttgaaactGTGACAaacattgtagtcaacatgggccagcatccctgtggaacgctttcaacaccttgtagagtccatgccccaacgaattgaggctgttctgagggcaaaagggggggtgcaactcagtattaggtAAGTGTTCCTACTgttgtgtacactcagtgtagataggCTGGGTAGCTGGGGAGGGCACAAAGACATTAGCAAAAAATAAAGATAAGCACACATTCCGGGATGAACGCTTACTGACATTAACTGGAAACTTAAGTGTAAATCTCCCATTGACACAAATGCATGATTTTTCACTAAAGTTTAAGGATCTCCAGTTAAAGAATCCATCTCTCACTCATTGATCAACCACAAAAAGTATTTAACTGCAGATCCAGGTTCAGCTTTCCCAACACAAATCCTAATCTTGTTCATAGGATGTAGAAATAGACACTGACCTTGAATCAGGGCTTAGGGGCAACTTCCATCAACACCACTAATATGAAGTCCAGCAAATCACATGTAATCACAGTAGACTACCGGACCCCAACATCCACAAACATACAGCGTCCTtttcaacaccaccaccaaccagCACACTTGAAAGCATGAAAATCACTTATATTATACTGCCGTAATGCATTCATAATGCAGTACTAACATGCGATAAATATGACCACCCATGTTTCTGATAACTGACATGTGAAACACGATCATCATAGCACATGAAACCATTTCCATGGCTTTACTGTTAGGCACATCAAGCGTTTGTTGTGAAATGTAGTCTGACGACTGCTGTGGCGTGTTATAGGATTTATGTGGCATTTGACATACCCTTTTTTACTGTACTGAGCTGAGCCAAGCTGTACTGCGTTGGCCTGGTTACGTACCATGTCAAAAGAAAATATCAGATCGAGCCAGCACACTACGGTTCAGGTTAGCACAATAGTGTAAAAAGGCTATAAAAGTGAAGTATAGCCAGTTTAGATGTGCCCTCTGATAGAGATGCAATCCCATGTCCCTATTAGAACATTTACTGTCTTGCACATGACACATTGAGTACGGTTACATGCACATTAATAATTTGAtgttaaactgattatggcagaagGCTGAatatggcattagtcatgtaaacaccttactctgcttatcttaaatCGGCATACGGTCATATTCAAAGTAAGCATACGCCAATTAAAACACCTGATTTTCTGAGCCATCTTTCAACATTTTAGGACATGTAAATGCTTTAATCAGTTTTAGCGATgtgtttgttctgtgtgtgtgtgtgtgtgtgtgtgttagcgcaAGCAGGGCGAGCTTCCTTCTTTTACACGAGTGAAGTGAGTTAGGAAAAACTTAAAGTACACATCTTAGAAGTCGTTTTCACATAAACGTTGTatgtccgaactcagaatcaaCTATGCTTCTCAAATAGCATGGTCgctgtggtagaacgtttattttgattgccGATATTCTGCATTCATCAAAGTCCCACCAGGTTGTCTGATTTCAGATGGCTCCATGTAAACACAATTATGAGGGAAATCATTTATTCTcgcaaagcatgtaaacgttttaatcaaactattatattaatttGACTATAAttgtattattgtgtgcatgtaaccgtacTCAGTGTGACACGGTCACAGTCAAAAAGTCACTAGTTGCAGAAAACTCTTTGAGCAAAGGCTTGAGTTTTAACACTGTAATCCACAACACTACTGTCATGGCTGCTGTTAAATAGGGATATTAGGTTTGATCCAAAGTGCTGCAATACTGTAGGAAATGGATAGACATGGGGTACTACAAACCAAGGACTCATCTCATACAGAAAGAATCACAACTTCTGAACCTCTCAACAGCAGGCAAACTCACTCCCTCCACTTCAAATCTCAATGCTCCCGAAACCACCTCATACTTCATCATAGTCCACCGGTCTTTGGCACACGTGGAGTTGACAATGTTTTAGTTGAGTTgtactttctcttcctctttttcaTTTATCTGCTGAATTAACTGAATTGAACTGAAGTTGACATCCAACCCTGGTACACAAGGATGAAAGGCCTTGTGATGAAAGGAAGGGAGCAAACAAAAGGGACAGTCCTTTCATTCTCGTTTCTTCTTCTTTACACTATAGGGAACAAAAAGACTGGACATTTAAAAACCACGCTTCGTTTCACAATACaacatacatctctctctccgaGTGCTATAGTACTTTCCACACACGCACTTCTAGTTAAAAGGGAGCACAGTGTCCTTTTACATACATTTCTCTCCTCCTGCAAGTCATTGACAAGAGGGTCTAACACACATTGGGGTCCATCAAATGGCTCAAAGCTAACTTTCTTGATGATCTGAGGGAGTGGTCACCATGCCAACAACAGCCATTTTGTGCCATTCGGCTCACATGTAGGCAGTTCTACTCTCTAAGGCATTGCCAATCGAGGAGAAGCCATTTAGTGCCATCGTGTTTGAGCCGCAATGGCCGCCTGACATTGTGCATTTCAGGTCACCATAATGTACTCTAACTGGCCACATCGCTTTTTTTGGCTTCCCAGAAATGCACCCATTAAAACAAATACTGAACCAAAATGGATGCTGGATGCCTCAGTTGCACTATTTCCATGAACCATCATCATTGAGCCCTCATGGCTGCCTACTCCTTCATGTCAGGAGAGAGCCTCTCTCTCAAACTCTAGTGTGAAACTGAACGACATCAGGCATGAAAtaaaaggggagggagggagggagcgggcTGGCTGTAGCATTTCATTGTCTGTTAGCACCACTTGGAGAAATAAGACGCAATGCACAAATGCAGAGTGCCGCCGCATCAAAGCAGTGACAAAATGAGCTATTATTGAATGTTTGTAGTAATAATAATGCCCTATTTGTGTGAATAGTGTTAGTTTAACAAACTGGACATGTTCCCATTAGCAGTGAGGAGTTAAAAGGAGTAAAGTTTCTGATGATTGGTTAACAACCCAATGTATCTATCCAGTAGGGGCCTTTCTCTCCCAAAATCCTTTTAGTGGTTCGTTGGAACGCGTTTCCCTCCGCTAGCTGGCAGTACTGagcatctgtccatctgtctcagtCCGCGTGTCGCGGAACATCGAAGAAACAGACGCAGTTGATGGTAGTCTAGAAAGGAGTGTAAAAAAATAGTACCTGAACCTTTGCTGAGGGAGAGGTCTGTAGAAACTAGAGGGAGTGTAACTCCTTTAGAGGGGAGGAATTCATTTTCCTACGCACCTAGATGACATAGTTATATTTTTACTTGGGTTTTCCCCTCTCGATTAGGGCATCCACAGAGAGCTGTGAAGCTAACAGGAAGTGATGTGGACTCACAGGAAGTGACCTGAACATGGGTTGTAGCCTGGTTAGGAAACACCTGGGAGAGGGGTCAGATGTGGGTAAGCATACACAGCATCCACACAGAGTCACTACTTCCACAAGGACAGTCACCTGCCTCGCAAAATGGAGTTGAGTGCAAGTTCATTGGCCAATAGGGATTTCCATTCCATTCAGCTTTATTAGTCCTCTGAGGCTTTCACGCTCAGATGCTGAACACAGCCTAGCTGGCAACAGGTCCCTCTACCATGGCACAGCAGGGGTGGCACTCAAAGATGGCACCCAGAAAGCCCAGCAGGAAGCAGGGAGGTGGGTGAGGGTTTCTGGTGACATGGCATTACCCCTCAGAAGATGCCCTTTGCGATTTTCAGGCCTTTCTGCTTCATTCGCGGCAGGGTGGAGCTGGCCACGTGCTTGGTCCGGCCCACCTTGGGGAAGCCGCGTTTCTTCAGGACAAAGTCGTAGTTGGCCGAAGAGTTCATGGCATAGAAAACGTTGGCATTGTCTGGAATCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420904 lncRNA downstream 2569 14223041 ~ 14224058 (-) True G370342
TU420903 lncRNA downstream 6460 14219258 ~ 14220167 (-) True G370341
TU420863 lncRNA downstream 49545 14176471 ~ 14177082 (-) True G370314
TU420847 lncRNA downstream 76559 14148496 ~ 14150068 (-) True G370298
TU420836 lncRNA downstream 79083 14145455 ~ 14147544 (-) True G370287
TU420917 lncRNA upstream 12837 14244425 ~ 14251246 (-) True G370352
TU421199 lncRNA upstream 78702 14310290 ~ 14310506 (-) True G370622
TU421225 lncRNA upstream 107708 14339296 ~ 14339515 (-) True G370646
TU421227 lncRNA upstream 110623 14342211 ~ 14342538 (-) True G370648
TU421193 lncRNA upstream 115227 14346815 ~ 14350188 (-) True LOC110523260
XR_005051648.1 mRNA downstream 1282 14222189 ~ 14225345 (-) True LOC118964566
XR_005051647.1 mRNA downstream 4009 14222189 ~ 14222618 (-) False LOC118964566
XR_005051646.1 mRNA downstream 54153 14170421 ~ 14172474 (-) True LOC118964565
XM_021601779.2 mRNA downstream 98075 14105765 ~ 14128552 (-) False LOC110523251
XM_021601780.2 mRNA downstream 98082 14105765 ~ 14128545 (-) False LOC110523251
XR_005051649.1 mRNA upstream 11466 14243054 ~ 14243735 (-) True LOC118964567
XM_036976849.1 mRNA upstream 24212 14255800 ~ 14259132 (-) True chchd10
XM_036976850.1 mRNA upstream 82126 14313714 ~ 14333300 (-) False smarcb1b
XM_036976851.1 mRNA upstream 82126 14313714 ~ 14333305 (-) True smarcb1b
XR_002473417.2 mRNA upstream 117728 14349316 ~ 14350138 (-) False LOC110523260
TU420894 other downstream 17922 14207190 ~ 14208705 (-) True G370333
TU419308 other downstream 1520535 12705566 ~ 12706092 (-) False G368921
TU419309 other downstream 1520535 12705566 ~ 12706092 (-) True G368921
TU418958 other downstream 2089837 12134052 ~ 12136790 (-) True G368612
TU415770 other downstream 5036529 9189669 ~ 9190098 (-) True G365752
TU421214 other upstream 195750 14427338 ~ 14428591 (-) True G370635
TU421926 other upstream 761540 14993128 ~ 14995159 (-) True LOC110524957
TU421988 other upstream 891887 15123475 ~ 15124789 (-) True G371294
TU422760 other upstream 1464504 15696092 ~ 15698329 (-) True LOC110523302
TU422972 other upstream 1744018 15975606 ~ 15976116 (-) True G372122

Expression Profile