RNA id: TU421025



Basic Information


Item Value
RNA id TU421025
length 275
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G370454
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14343673 ~ 14343947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


caacAATATTTGACTGATATGCGTTTTAAATGATTATCTTTAAATTAAAAAACAAGTTGTCCCccgaaagccagatggagatgggtaaatGAGACTCGCATTCGGTCTTTATATTACTTTGGCTATACTgcagcaaatgtaggcctacgtctacatgcattgtgaactaCACTCTATAATGCAATGGGCTGTCTGCCCCCACCCTTTGATTCATCAGAGGCTGTAGAGaagacagatttagacattgcatatcaTTTCATAGTTCCAATTCATGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421024 lncRNA upstream 77 14343347 ~ 14343596 (+) True G370453
TU421023 lncRNA upstream 4091 14339349 ~ 14339582 (+) True G370452
TU421015 lncRNA upstream 31100 14312169 ~ 14312573 (+) True G370444
TU421014 lncRNA upstream 31831 14311549 ~ 14311842 (+) True G370443
TU421013 lncRNA upstream 33168 14310022 ~ 14310505 (+) True G370442
TU420999 lncRNA downstream 1037 14344984 ~ 14345550 (+) True G370428
TU421026 lncRNA downstream 6893 14350840 ~ 14351142 (+) True G370455
TU420974 lncRNA downstream 25062 14369009 ~ 14369485 (+) True G370403
TU421028 lncRNA downstream 25555 14369502 ~ 14369738 (+) True G370457
TU421029 lncRNA downstream 26048 14369995 ~ 14370231 (+) True G370458
XM_021601785.2 mRNA upstream 34954 14272305 ~ 14308719 (+) True mmp11b
XM_036976848.1 mRNA upstream 114365 14148432 ~ 14229308 (+) False LOC110523253
XM_021601787.2 mRNA downstream 1686 14345633 ~ 14347412 (+) True LOC110523258
XM_021601789.2 mRNA downstream 7506 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA downstream 7506 14351453 ~ 14367540 (+) True LOC110523259
XM_021601793.2 mRNA downstream 33012 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA downstream 38521 14382468 ~ 14429468 (+) False LOC110523261
TU420951 other upstream 17778 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 84540 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 574377 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1234539 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2463638 11878329 ~ 11880035 (+) True G367684
TU420985 other downstream 23725 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 460714 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 704231 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 780343 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1447612 15791559 ~ 15795122 (+) False G371615

Expression Profile