RNA id: TU420999



Basic Information


Item Value
RNA id TU420999
length 567
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G370428
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14344984 ~ 14345550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTAAATAGTACAATGTGTAAATAGTACAATGAAAGTATTACTTGCAGCTCTTCCTCAACTGCAGAATGATTGTAAAGTAGCAGAGTCAATCAATAGACAATTAGacaatacaaataaaatgatcaCAACAGTTGGTAAAAAAAGACAAGGTAATAAAACCTATAATAAAAGAACACAAtaatttaaagatgcactatgcagaaatcgctccaccaCTTTCTGGTTGCAAAAATTATGTTTATGtcacaaaacaagcaagtatattGTAGAGAGTAATTGTACCATATAAACAACTGTgaatatatattttccataaccataAATATTgtgttttcagctgtttgaagctggtgtacaaaacccaaagtaaaaGAAGCAAAACCGAAACTTAAGaggaaacatagaaatagaacacataaaacataTCTACTGCTTCTTAAACTTGAATtcgatgagaatgacagatctgtaacacacatttctatgtaaaCTTGGTTGGGTCGCTACATTTTGCAGCTTTAATGTAAAAATTGATAAAGGAGAGCAAATGTCCACAATTGATTAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421025 lncRNA upstream 1037 14343673 ~ 14343947 (+) True G370454
TU421024 lncRNA upstream 1388 14343347 ~ 14343596 (+) True G370453
TU421023 lncRNA upstream 5402 14339349 ~ 14339582 (+) True G370452
TU421015 lncRNA upstream 32411 14312169 ~ 14312573 (+) True G370444
TU421014 lncRNA upstream 33142 14311549 ~ 14311842 (+) True G370443
TU421026 lncRNA downstream 5290 14350840 ~ 14351142 (+) True G370455
TU420974 lncRNA downstream 23459 14369009 ~ 14369485 (+) True G370403
TU421028 lncRNA downstream 23952 14369502 ~ 14369738 (+) True G370457
TU421029 lncRNA downstream 24445 14369995 ~ 14370231 (+) True G370458
TU421043 lncRNA downstream 56289 14401839 ~ 14402147 (+) True G370472
XM_021601785.2 mRNA upstream 36265 14272305 ~ 14308719 (+) True mmp11b
XM_036976848.1 mRNA upstream 115676 14148432 ~ 14229308 (+) False LOC110523253
XM_021601787.2 mRNA downstream 83 14345633 ~ 14347412 (+) True LOC110523258
XM_021601789.2 mRNA downstream 5903 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA downstream 5903 14351453 ~ 14367540 (+) True LOC110523259
XM_021601793.2 mRNA downstream 31409 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA downstream 36918 14382468 ~ 14429468 (+) False LOC110523261
TU420951 other upstream 19089 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 85851 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 575688 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1235850 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2464949 11878329 ~ 11880035 (+) True G367684
TU420985 other downstream 22122 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 459111 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 702628 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 778740 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1446009 15791559 ~ 15795122 (+) False G371615

Expression Profile