RNA id: TU420978



Basic Information


Item Value
RNA id TU420978
length 223
lncRNA type antisense_over
GC content 0.64
exon number 1
gene id G370407
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14430847 ~ 14431069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGGAAAGGGGAGCAGTGCAAGGAGTGGACAGGGCCTCCTCGGGGGCTGAAGGAGAACTGGGCTGGGGCACGCAAGGTCACACTCTCTCCATCGGGAGGTGCTGCTGCCAGCGTCTGGGCTGAGAAAGAGCACTTAAGGACCAGGCCGCTTTCGGAGCCCACCAGGAATGTGTCCAAGTCCCAGGGGGACAGGGCCAGGGAGGTGACCCCCACATTGCTGCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421043 lncRNA upstream 28700 14401839 ~ 14402147 (+) True G370472
TU421029 lncRNA upstream 60616 14369995 ~ 14370231 (+) True G370458
TU421028 lncRNA upstream 61109 14369502 ~ 14369738 (+) True G370457
TU420974 lncRNA upstream 61362 14369009 ~ 14369485 (+) True G370403
TU421026 lncRNA upstream 79705 14350840 ~ 14351142 (+) True G370455
TU421047 lncRNA downstream 958 14432027 ~ 14432389 (+) True G370476
TU420977 lncRNA downstream 1580 14432649 ~ 14432907 (+) True G370406
TU420984 lncRNA downstream 2363 14433432 ~ 14433707 (+) True G370413
TU420973 lncRNA downstream 3180 14434249 ~ 14437006 (+) True G370402
TU421088 lncRNA downstream 95214 14526283 ~ 14526559 (+) True G370516
XM_021601793.2 mRNA upstream 1379 14376959 ~ 14429468 (+) False LOC110523261
XM_021601791.2 mRNA upstream 1379 14382468 ~ 14429468 (+) False LOC110523261
XM_036976853.1 mRNA upstream 1379 14391069 ~ 14429468 (+) False LOC110523261
XM_036976854.1 mRNA upstream 1379 14391069 ~ 14429468 (+) False LOC110523261
XM_036976855.1 mRNA upstream 1379 14391069 ~ 14429468 (+) False LOC110523261
XM_021601806.2 mRNA downstream 7047 14438116 ~ 14447360 (+) True uap1l1
XM_021601816.2 mRNA downstream 114500 14545569 ~ 14547879 (+) True LOC110523268
XM_036976865.1 mRNA downstream 116874 14547943 ~ 14628975 (+) False fam102ab
XR_005051650.1 mRNA downstream 120009 14551078 ~ 14630069 (+) False fam102ab
XM_021601817.2 mRNA downstream 211704 14642773 ~ 14672009 (+) False LOC110523269
TU420985 other upstream 62686 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 104952 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 171714 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 661551 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1321713 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 373592 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 617109 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 693221 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1360490 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1788537 16219606 ~ 16220933 (+) True G372281

Expression Profile