RNA id: TU420977



Basic Information


Item Value
RNA id TU420977
length 259
lncRNA type antisense_over
GC content 0.54
exon number 1
gene id G370406
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14432649 ~ 14432907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTCGTTCTGATCCTCCCAATTCACATCGAACCCATCAAACGCATGACTCTTGGCGTTGCTGGCCAACTCCTTGAGAACCATGTCCTCCACTCGATGCAGGAAGTCCCTCAGCCCGGGAGACTCTGGTCGGAGCTCACCTTTAGGGGGGAGTTGGTATATGAGGTGGTCTTGTGGATCCGTCTGGGTGCCATTATCTGCATTAAGCAGGGGCTGTATTTCAGCCTCAGCTGTGTGTACGGGCCGGGTTTGACAACCTCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421047 lncRNA upstream 260 14432027 ~ 14432389 (+) True G370476
TU420978 lncRNA upstream 1580 14430847 ~ 14431069 (+) True G370407
TU421043 lncRNA upstream 30502 14401839 ~ 14402147 (+) True G370472
TU421029 lncRNA upstream 62418 14369995 ~ 14370231 (+) True G370458
TU421028 lncRNA upstream 62911 14369502 ~ 14369738 (+) True G370457
TU420984 lncRNA downstream 525 14433432 ~ 14433707 (+) True G370413
TU420973 lncRNA downstream 1342 14434249 ~ 14437006 (+) True G370402
TU421088 lncRNA downstream 93376 14526283 ~ 14526559 (+) True G370516
TU421092 lncRNA downstream 96357 14529264 ~ 14529588 (+) True G370520
TU421094 lncRNA downstream 97666 14530573 ~ 14530923 (+) True G370522
XM_036976857.1 mRNA upstream 3181 14391069 ~ 14429468 (+) False LOC110523261
XM_021601806.2 mRNA downstream 5209 14438116 ~ 14447360 (+) True uap1l1
XM_021601816.2 mRNA downstream 112662 14545569 ~ 14547879 (+) True LOC110523268
XM_036976865.1 mRNA downstream 115036 14547943 ~ 14628975 (+) False fam102ab
XR_005051650.1 mRNA downstream 118171 14551078 ~ 14630069 (+) False fam102ab
XM_021601817.2 mRNA downstream 209866 14642773 ~ 14672009 (+) False LOC110523269
TU420985 other upstream 64488 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 106754 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 173516 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 663353 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1323515 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 371754 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 615271 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 691383 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1358652 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1786699 16219606 ~ 16220933 (+) True G372281

Expression Profile