RNA id: TU421088


Basic Information

Item Value
RNA id TU421088
length 277
lncRNA type intronic
GC content 0.48
exon number 1
gene id G370516
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14526283 ~ 14526559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcaaagcatcaataccgGACTAAGATCGAaacatactacaccggctctgacgctcgtcggatatggcagggcttgcaaaccattacagactacaaaagggaagcacagccgagagctgcccagtaacaCAAGCCTgcctaaactacttctatgctcgcttcgaggcaaataacactgaaacatgcatgagagcaccagctgttccagaagactgtgtgatcatgctctccgcaaccgatgtaagtaagacctttaaacaggtcaacattcacaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420973 lncRNA upstream 89277 14434249 ~ 14437006 (+) True G370402
TU420984 lncRNA upstream 92576 14433432 ~ 14433707 (+) True G370413
TU420977 lncRNA upstream 93376 14432649 ~ 14432907 (+) True G370406
TU421047 lncRNA upstream 93894 14432027 ~ 14432389 (+) True G370476
TU420978 lncRNA upstream 95214 14430847 ~ 14431069 (+) True G370407
TU421092 lncRNA downstream 2705 14529264 ~ 14529588 (+) True G370520
TU421094 lncRNA downstream 4014 14530573 ~ 14530923 (+) True G370522
TU421096 lncRNA downstream 6406 14532965 ~ 14534995 (+) True G370524
TU421108 lncRNA downstream 98213 14624772 ~ 14628755 (+) True fam102ab
TU421151 lncRNA downstream 114961 14641520 ~ 14641856 (+) True G370575
XM_021601806.2 mRNA upstream 78923 14438116 ~ 14447360 (+) True uap1l1
XM_036976857.1 mRNA upstream 96815 14391069 ~ 14429468 (+) False LOC110523261
XM_021601816.2 mRNA downstream 19010 14545569 ~ 14547879 (+) True LOC110523268
XM_036976865.1 mRNA downstream 21384 14547943 ~ 14628975 (+) False fam102ab
XR_005051650.1 mRNA downstream 24519 14551078 ~ 14630069 (+) False fam102ab
XM_021601817.2 mRNA downstream 116214 14642773 ~ 14672009 (+) False LOC110523269
XM_021601818.2 mRNA downstream 116214 14642773 ~ 14672009 (+) False LOC110523269
TU420985 other upstream 158122 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 200388 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 267150 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 756987 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1417149 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 278102 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 521619 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 597731 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1265000 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1693047 16219606 ~ 16220933 (+) True G372281

Expression Profile