RNA id: TU421151


Basic Information

Item Value
RNA id TU421151
length 337
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G370575
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14641520 ~ 14641856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGATGTGGAGAGCATTTATGTAAAGTTACAACTTTGAGGTTTCAAGCAAGGAAAATTATACCTAGTGAGAAAATCTTTACTTCAGAATAATGCTTATTTTGGAACATCTCCTATTGTAAGTGATATCCAGGTGAATGGCATAGGTTTACTAGATAAGAAATTCAACAATCGTTTAGTAAGGGATATTTTCTACAGACATTCTATTCCTTCTGCTATATTTTTTTGGGCATCATCGTTTGATGTAAACTGGCGCCGTGCTTGGCTCACTCCACACACATTTATGGTGACCAATAAAGTAAAGGAGATCTCCTTTAAGATTATCCATAGATTATACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421108 lncRNA upstream 12765 14624772 ~ 14628755 (+) True fam102ab
TU421096 lncRNA upstream 106525 14532965 ~ 14534995 (+) True G370524
TU421094 lncRNA upstream 110597 14530573 ~ 14530923 (+) True G370522
TU421092 lncRNA upstream 111932 14529264 ~ 14529588 (+) True G370520
TU421088 lncRNA upstream 114961 14526283 ~ 14526559 (+) True G370516
TU421118 lncRNA downstream 29706 14671562 ~ 14671862 (+) True LOC110523269
TU421113 lncRNA downstream 34256 14676112 ~ 14677187 (+) True G370539
TU421105 lncRNA downstream 36680 14678536 ~ 14684415 (+) True dpm2
TU421111 lncRNA downstream 53294 14695150 ~ 14695702 (+) True G370537
TU421483 lncRNA downstream 94155 14736011 ~ 14749996 (+) True G370867
XR_005051650.1 mRNA upstream 11451 14551078 ~ 14630069 (+) False fam102ab
XM_036976865.1 mRNA upstream 12545 14547943 ~ 14628975 (+) False fam102ab
XM_021601816.2 mRNA upstream 93641 14545569 ~ 14547879 (+) True LOC110523268
XM_021601806.2 mRNA upstream 194160 14438116 ~ 14447360 (+) True uap1l1
XM_036976860.1 mRNA upstream 212052 14391069 ~ 14429468 (+) False LOC110523261
XM_021601817.2 mRNA downstream 917 14642773 ~ 14672009 (+) False LOC110523269
XM_021601818.2 mRNA downstream 917 14642773 ~ 14672009 (+) False LOC110523269
XM_036976866.1 mRNA downstream 917 14642773 ~ 14672009 (+) False LOC110523269
XM_036976867.1 mRNA downstream 917 14642773 ~ 14672009 (+) False LOC110523269
XM_021601823.2 mRNA downstream 36264 14678120 ~ 14684431 (+) False dpm2
TU420985 other upstream 273359 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 315625 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 382387 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 872224 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1532386 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 162805 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 406322 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 482434 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1149703 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1577750 16219606 ~ 16220933 (+) True G372281

Expression Profile