RNA id: TU421113



Basic Information


Item Value
RNA id TU421113
length 1076
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G370539
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14676112 ~ 14677187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagtttgtccgccctctctgtcgtggttagaatggatagttcagagtgacattcattcatgtcgttatggatagatgttttggcggttgtcggtcttcgcgttcaatgataccgaattcctagctgcagactagtaattaatatcagaCTTGTttttattctgtcggtatcgatagtctaagagtttaaccacgtgggatggttaaaagattcagcagtctggtctcaaaccttggccctctcgttataCAAAAATTAGATGTaagcctcatatctgaggctattatataaacagcgttatggtaatgtggccgtattgtctcccatgagtttcacaaTATTGTAccaaatggaccagttcgtagctggattcttcaccgatcttttataccttcaccagaacataaatgttgctCGGACaacaagttctgtgaggtggaagaaattcctttgttctctatgaaaattcactctgtctctatactgtggccatgaggagatcatctccaggaatttacgacctctctctgaccacagcagcctgggtgtaggagatagggggatggggcttgctgtagcCAAAGAGGGCAATGTCAtgacagtctatcacagtgccaaccattttgtcaccaaagccccatatactacccatcactgcgacctgtatgctctcgttggatgGCCCTCGCTTTatatttgttgccaaacccactgactccaggtcatctataagtctttgctaggtaaagccccgccttatctcagctcactggtcaccattgcagcacccacccgtagcacactcTCCATCAGGTATATTTCACAGGTCACCCCCAGAGCCAATttctactttggccgcctttccttccagttctctgctgccaatgactggaacgaattgtaaaaatcactgaagctggagactcatatctccctcactaactttaagcaccagctgtcagagcagctcacagatcaccgCACCTGTACAtggcccatccaactacctcatccccatacggttatttatttttgctcctttgcaccccgtatctctacttgcacattcatcttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421118 lncRNA upstream 4250 14671562 ~ 14671862 (+) True LOC110523269
TU421151 lncRNA upstream 34256 14641520 ~ 14641856 (+) True G370575
TU421108 lncRNA upstream 47357 14624772 ~ 14628755 (+) True fam102ab
TU421096 lncRNA upstream 141117 14532965 ~ 14534995 (+) True G370524
TU421094 lncRNA upstream 145189 14530573 ~ 14530923 (+) True G370522
TU421105 lncRNA downstream 1349 14678536 ~ 14684415 (+) True dpm2
TU421111 lncRNA downstream 17963 14695150 ~ 14695702 (+) True G370537
TU421483 lncRNA downstream 58824 14736011 ~ 14749996 (+) True G370867
TU421499 lncRNA downstream 86364 14763551 ~ 14763750 (+) True G370882
TU421500 lncRNA downstream 87011 14764198 ~ 14764544 (+) True G370883
XM_021601817.2 mRNA upstream 4103 14642773 ~ 14672009 (+) False LOC110523269
XM_021601818.2 mRNA upstream 4103 14642773 ~ 14672009 (+) False LOC110523269
XM_036976866.1 mRNA upstream 4103 14642773 ~ 14672009 (+) False LOC110523269
XM_036976867.1 mRNA upstream 4103 14642773 ~ 14672009 (+) False LOC110523269
XR_005051650.1 mRNA upstream 46043 14551078 ~ 14630069 (+) False fam102ab
XM_021601823.2 mRNA downstream 933 14678120 ~ 14684431 (+) False dpm2
XM_021601825.2 mRNA downstream 968 14678155 ~ 14684431 (+) False dpm2
XM_021601821.2 mRNA downstream 7407 14684594 ~ 14693573 (+) True pip5kl1
XM_021601826.2 mRNA downstream 29608 14706795 ~ 14759767 (+) False sh3glb2b
XM_021601827.2 mRNA downstream 29608 14706795 ~ 14759767 (+) False sh3glb2b
TU420985 other upstream 307951 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 350217 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 416979 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 906816 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1566978 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 127474 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 370991 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 447103 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1114372 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1542419 16219606 ~ 16220933 (+) True G372281

Expression Profile