RNA id: TU421500


Basic Information

Item Value
RNA id TU421500
length 347
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G370883
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14764198 ~ 14764544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaagagagctgggaccacagtctcaaagaaaaccattagtaacacactacaccgtcatggattaaaatcccgcagcgcacgcaaggtccccctgctcaagccagcgcatgtccaggtccgtctgaagtttgccaatgaccatctggatgatccagaggaggaatgggagaaggtcatgtggtctgatgagacaaaaatatagctttttggtctaaactccactcgccgtgtttggaggaagaagaaggatgagtacaaccccaagaacaccatcccaaccgtgaagcatggaggtggaaacatcattctttggtgttgaggggaggatggatggggccatgtatagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421499 lncRNA upstream 448 14763551 ~ 14763750 (+) True G370882
TU421483 lncRNA upstream 14202 14736011 ~ 14749996 (+) True G370867
TU421111 lncRNA upstream 68496 14695150 ~ 14695702 (+) True G370537
TU421105 lncRNA upstream 79783 14678536 ~ 14684415 (+) True dpm2
TU421113 lncRNA upstream 87011 14676112 ~ 14677187 (+) True G370539
TU421508 lncRNA downstream 6493 14771037 ~ 14771236 (+) True G370886
TU421510 lncRNA downstream 8881 14773425 ~ 14773709 (+) True G370888
TU421511 lncRNA downstream 13449 14777993 ~ 14778218 (+) True G370889
TU421512 lncRNA downstream 13701 14778245 ~ 14778469 (+) True G370890
TU421513 lncRNA downstream 15129 14779673 ~ 14779877 (+) True G370891
XM_021601838.2 mRNA upstream 4431 14706795 ~ 14759767 (+) False sh3glb2b
XM_036976870.1 mRNA downstream 20927 14785471 ~ 14792549 (+) False LOC110523276
XM_036976536.1 mRNA downstream 34228 14798772 ~ 14805526 (+) False LOC118964542
XM_036976871.1 mRNA downstream 54765 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 54765 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 54765 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 396037 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 438303 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 505065 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 994902 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1655064 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 40117 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 283634 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 359746 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1027015 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1455062 16219606 ~ 16220933 (+) True G372281

Expression Profile