RNA id: TU421510


Basic Information

Item Value
RNA id TU421510
length 285
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G370888
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14773425 ~ 14773709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAtaataatgctatttctgactttcagaAATAACCagctgcctggttgaaatatgtttttcatgcttttgtatgcggggcgctgtcctcagataatcgcatggtgtgctttcgctgtaaagcctttttgaaatctgacacagtggctggattaacaagaagttaagctttattttgatatattacacttgtgatattatgaaagttaaatatttataattctgtagtttgaatttcacgctctgcaatttcactggatgttggccaggtgggacgctaccgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421508 lncRNA upstream 2189 14771037 ~ 14771236 (+) True G370886
TU421500 lncRNA upstream 8881 14764198 ~ 14764544 (+) True G370883
TU421499 lncRNA upstream 9675 14763551 ~ 14763750 (+) True G370882
TU421483 lncRNA upstream 23429 14736011 ~ 14749996 (+) True G370867
TU421111 lncRNA upstream 77723 14695150 ~ 14695702 (+) True G370537
TU421511 lncRNA downstream 4284 14777993 ~ 14778218 (+) True G370889
TU421512 lncRNA downstream 4536 14778245 ~ 14778469 (+) True G370890
TU421513 lncRNA downstream 5964 14779673 ~ 14779877 (+) True G370891
TU421517 lncRNA downstream 9922 14783631 ~ 14783918 (+) True G370895
TU421518 lncRNA downstream 10579 14784288 ~ 14784494 (+) True G370896
XM_021601838.2 mRNA upstream 13658 14706795 ~ 14759767 (+) False sh3glb2b
XM_036976870.1 mRNA downstream 11762 14785471 ~ 14792549 (+) False LOC110523276
XM_036976536.1 mRNA downstream 25063 14798772 ~ 14805526 (+) False LOC118964542
XM_036976871.1 mRNA downstream 45600 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 45600 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 45600 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 405264 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 447530 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 514292 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1004129 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1664291 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 30952 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 274469 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 350581 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1017850 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1445897 16219606 ~ 16220933 (+) True G372281

Expression Profile