RNA id: TU421511


Basic Information

Item Value
RNA id TU421511
length 226
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G370889
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14777993 ~ 14778218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctatcgtctgtaagctgttagtgtcttaatgaccattccacaagtgcctgttcattaattgtttatggttcattgaacaagcatgggaatcagtgtttaaaccctttacaatgaagatctgtgaagttatttggatttttacgaattatctttgaaagacagggtcctgaaaaagggacatttctttttttgctgaggttACACCTGAGCCTGCTTACTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421510 lncRNA upstream 4284 14773425 ~ 14773709 (+) True G370888
TU421508 lncRNA upstream 6757 14771037 ~ 14771236 (+) True G370886
TU421500 lncRNA upstream 13449 14764198 ~ 14764544 (+) True G370883
TU421499 lncRNA upstream 14243 14763551 ~ 14763750 (+) True G370882
TU421483 lncRNA upstream 27997 14736011 ~ 14749996 (+) True G370867
TU421512 lncRNA downstream 27 14778245 ~ 14778469 (+) True G370890
TU421513 lncRNA downstream 1455 14779673 ~ 14779877 (+) True G370891
TU421517 lncRNA downstream 5413 14783631 ~ 14783918 (+) True G370895
TU421518 lncRNA downstream 6070 14784288 ~ 14784494 (+) True G370896
TU421519 lncRNA downstream 6436 14784654 ~ 14784879 (+) True G370897
XM_021601838.2 mRNA upstream 18226 14706795 ~ 14759767 (+) False sh3glb2b
XM_036976870.1 mRNA downstream 7253 14785471 ~ 14792549 (+) False LOC110523276
XM_036976536.1 mRNA downstream 20554 14798772 ~ 14805526 (+) False LOC118964542
XM_036976871.1 mRNA downstream 41091 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 41091 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 41091 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 409832 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 452098 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 518860 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1008697 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1668859 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 26443 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 269960 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 346072 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1013341 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1441388 16219606 ~ 16220933 (+) True G372281

Expression Profile