RNA id: TU421518


Basic Information

Item Value
RNA id TU421518
length 207
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G370896
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14784288 ~ 14784494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtTGGGgattaatcagaattagttgggtaacatagataagatgttttattttcatgatatgcttatgagttatttctcataagaatgtattttgttgtactatagtggtggcaTTTGCAATTATCTGTTCTCTatcaagactaagttgcttggtccgcagagaggggagaggtcataTGTTTACACATGTCATCATGTCAtccta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421517 lncRNA upstream 370 14783631 ~ 14783918 (+) True G370895
TU421513 lncRNA upstream 4411 14779673 ~ 14779877 (+) True G370891
TU421512 lncRNA upstream 5819 14778245 ~ 14778469 (+) True G370890
TU421511 lncRNA upstream 6070 14777993 ~ 14778218 (+) True G370889
TU421510 lncRNA upstream 10579 14773425 ~ 14773709 (+) True G370888
TU421519 lncRNA downstream 160 14784654 ~ 14784879 (+) True G370897
TU421520 lncRNA downstream 454 14784948 ~ 14785249 (+) True G370898
TU421521 lncRNA downstream 7245 14791739 ~ 14793184 (+) True LOC110523276
TU421527 lncRNA downstream 14122 14798616 ~ 14798817 (+) False LOC118964542
TU421538 lncRNA downstream 32265 14816759 ~ 14816984 (+) True G370913
XM_021601838.2 mRNA upstream 24521 14706795 ~ 14759767 (+) False sh3glb2b
XM_036976870.1 mRNA downstream 977 14785471 ~ 14792549 (+) False LOC110523276
XM_036976536.1 mRNA downstream 14278 14798772 ~ 14805526 (+) False LOC118964542
XM_036976871.1 mRNA downstream 34815 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976872.1 mRNA downstream 34815 14819309 ~ 14892194 (+) False cdk5rap2
XM_036976873.1 mRNA downstream 34815 14819309 ~ 14892194 (+) False cdk5rap2
TU420985 other upstream 416127 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 458393 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 525155 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1014992 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1675154 13108696 ~ 13109134 (+) True G368440
TU421530 other downstream 20167 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 263684 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 339796 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 1007065 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1435112 16219606 ~ 16220933 (+) True G372281

Expression Profile