RNA id: TU421456


Basic Information

Item Value
RNA id TU421456
length 4856
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G370841
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14925971 ~ 14930826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaCAGTAAAGCAACTGTTGTGGTGTTGTCAAGGCTCTATTATTCCATTGTTACAAGAGTCTGGGGCATTCATCATTTCTCCACTAAGAAAGCCAGTGTTTACTCATTTTGGCAACGAAGTGAAAACCTATCATTACATGGGCAACACTGATGTAGAAGAGATACAGATTGTCATTTGCCCATTAACTTTTGACAGGTCCATGTTTTTACACTTAAATGAAACAAGAGCAACATTATAGTGCCACCCAATGTGGGTGGCGTACAGTATGTGAACCTGGCATAAAATGTGTGGGTTGAGATGTTGACCAGACTGTCCAAGCAGATGGAAAGGAACCAAAACCTGACAGGAACAAAAGCCAGCACACATCAGGGCCCTTACAATGCCTGCCAGCAAAACATCAAAGAAAGATAGCTAGATACAGGCTTGTACCAACTGATCTCATTCAGTTGGCTGACAGAAATAtgtatcattgtcttgttgaccACCCAAAGTATGGCTTACAAGAAATAAAAAGCATTGTTTGACAGACAATGTGCATTTCCATAGCCCTACCCAATATTGAGAGAGCATGCCATGGCCGTGCCAATTGTTAATGCTACGGAGATATCACAAAActaaattgtattagtcacatgcttcgtaaaacaggtgtagactaacagtgaaatgcttacttacgaccCTTCATAACATCGCAGAGGGAAAAATAACACGATGAATGAATACACAATGAATAAAGATGGCATTAGTTAGGTGATAACTTGGCTATGTTATCATCAACTAAGCCAAGTACAATATGTAATAAGAAGCCTTTCTCGGACTCCCTGAACTGTTTCCATAGGCTGTGTTTTTTAGACCAACTTTTTAACTCTATCATAAACAATATAGTGTAGTATCATGAACCCCCTATTAAAAAGTAGGTTGTTTGCCTAATTATGCATATGCAATAAGAGTTAACCTAGAAACGATTCCCCAAAACAGGTCAAATACATAATGAGAAGCATCAATGCTGCTTCGACAGTTTTGGTATGCTACCCAAATGATACACAATGTGGTTAAATGACTGGCCATTAAGAGTCAGAAAATTCTAATATTTTGATGGTAATACACACAACCTTacagcattttttattttacattacaaaacaaatggagaaaAGGACAGTGAACACTTTCCTCTGTTACTCAGACCTCCCGCAGGAGGGCGCTCCACCCACACTGGATGCACAGGAGGACTGTTGAAATAAGGCAAGCGTTGCATAGCTCGAGCACTGAACACCATTTCTGACCAGTCTGAGAACTTGAATGTTGCTTatgaaaacaaacattcagtAACTCTGCAAAAAACACATTAAATAAAAGGAATGTTGGGATGCATACATGGAAAATAACATTCACAACAGTCACATTGCTGATGGGATGATAAAATAAAGATAGGATGTGTGCAGTgaaaggtgttgttttacagggtcagccatagtaataTGGTGCCTCTGGAGCACTCTAGGGTTAAGTGCctcgctcaagggcacagacagatttttcaccttgtcggctcaggtcttcaaaccagtgaccttccagttactggcccaatgctcaaCCGCTTGGCTACCTGCTACCCTTGCGGTCAACTGTTGTGACCATGGCATGACTACCTACAGTACCGAACATACTGGCACAGTCCTATACAGATGTACAATAGAAGTTGTCTCCAACCACAGGATCAGATATTATTTAATTTCCTAATGACTAAGCTCATAATGAGGGTACTGCAATCTGACCCTAGACCATGCAACATGTACCTTGAGCCGAACAGAAACCGTTCCTACAGTGACTTGATCGGGGGAAGCCTTTTCTGTGGGTCAAACACACTTCCGGTCACACtttgttgataagcaactgcttgcgaaggttacagttagggttaggtctaagttaagggttaaggttagggcggcaggtagcctagcagttaagagcgttggaccagtcgctggtttgaatccccaagcagactaggtgaaaaatctgttgatgtgcccttgagtaaggcTATTAACCCTATTTGCTCCTGTATGTAgatctggataagagcctctgctaaattactaaaatataaTGTAATTGGTTAGGGCTAGCAGATAGTTAGCTGAAATGTAACTTAGTCTGTAGAACATATACAGATTGACTATTCAAATAAAAATGTTCACACTTCCTAGTTCCACTGCTCCGTAAACACTTTGCTGACCTCACCCTCCACCGGTTTCCTCCATGGCGACatactggaggggggggggggggggggggggggggggggggggggggggggggggggggggttgtgaaaTAGAAGTTTGAAATCTCTATGTGCTTTTTAGGGGGGAATGCCTAATCTTGTGATTAAGGGAAGTGACAGTGTTCCCACTGTGTTGAAGGTCAGTACAAGTACAGGTCAGGATAAAAACAGATTTTTAATTTGTTGGGGAGGACTATGGAAAAGGATAAAAAGCTGGAGCATTAGATCTGGTTAGATACAAATAGTTCAGTgtaaaaacaatacatttataGAGTTAGACGTGATACAGAAGAATAGCATGTAACCACTGCCTCAGCTGAACTGAAAGAGGCTTACATGATTCTTTATGACGCTTTATGGCTTTTAAAGAGTGACAGCAATTATATACACAACAATATATTCTGAAATATATTATCCTGTTCTATTATCAGAATCTCAATTTTCTTCTCCGATTCAGTCAGCGCTAACTGTTTCCATATTTACCCCTTCAAATCTGTGCCACATTAAAGCTGTGAATCAATGAGCTCTCCAGTGAAGCCCTGAGATAGTCCTATGGTACTCTCAAAACAGTGTGTTAAGATAGCTCAACCACATCAATCATAACAGCCCGTTTAAGGAATGACCTGGGGGGTACCTGTTTGCAGTTTTCAAATGTTTCAAAAAGTTTGGAACATGTCAGAGAATAATACTTCAACATTAAAGTAGGTCTGTATTCAACCACCCAAGTCTCGACCAGCGAGCCTCTGCTCTGGGATTGCTTGTTCTTCTCTGATGCACTCTTACTCTGTGAGCGTTGCTCCAGCCTTTTAGAGCTGGGGACTAGCCTTTACTAACAAATCCAAGACTGAGGCCTTTTCAGAACAGAGCTGGACTCAAAACACCCATTGGTAACCTTGCAAAAAGGGCAGTTATGTATGTAGTTATTACATTTTAAAGATGAATTCAGCTCACTTTCCTCCAAAGTGAGGCTTCCCTCTCCTTTGAAAATAACTTGGAACAGCtggtaaaaataataataccaTGTAAATTCTTGAAACATAAATGTAAAACATTATAAGCTATACATTTGTCTGCATATTTAGCAAAATCATGAACATGATGGTTGTAATGACACAGCGTGGGACATACATTACAGCACCAGAAAGGGAAGGCCATATTAGTAACAAGAGTTGCCTGGCTGGTCTTAAAGGAATCACCTTTGGTGGCAATTGACCTCTAATGTTGTCTACTCCAAGTCCATTCAATAAAAAAGTATCTCTTCGATATTCATGCAGAATATACCTCACAAATGTGTTCTGTATAAGCCAATGATGTATCCACGGTCACTGTTTTGGAGTGCAAATATCTGGGTTGTTTTCATTAGGGCACACGGTAACAAACATTTTTAAATGTGTTGCAGAAAACAACAATTTGTGTTATTTTTGGACAAGTCCAGGTCGTTTCAGTCCATTTCCCACTATTTGGTGCCTAATAAAACAGGGCCCTGCTTTGGTTCCATCGGCCATAGTGTTTCATTCACCAGTCAGATCCTGCGTCCTCTCACTGGCGTTTGGATAAACAGCCTAGTGGACTGTATACTTCCAAGTGAAGATGGaaaacagagcacacacacatatattgcTTTGTAGGCTACATGAACCATCCACACCAACTCTTTTATGTAGTCCTTCTGTGGCCACTGTCTATACCAGAAATGTCAAAACATACCTGTCAGTtgtttgagaaaaaaaaatatatataaatattggtTTTTCTTTTGGTGGGGAAACATACTCAATATagtttaaaatgactaaaaccaaatggaaacggtgtagaaatgataatggaaGCTAGACAGTCCGGGAGGATTGACCTCAAAGACCAAATGCAGCCCCCAGAGCAAAATGAGTTTGACAACCTTGACCCATACTGAGATGACTccgtacaaacaaacaaacaaacaaaatcctCAATCTCACAAGCATTTCATTtctgtctctcatcctctcctaaTCAGCATTCGACAACGATCGACTTTGCACATCATTTCATAAAAGAAAAAGGGAGAAAAGAACCAAAGTTGGAGAGGAGAGGTCTCCATCTGGTTAGTCTGTTAATAAACATCTTGTGACCCTGTGACTAGGGATGTGatggtcatggaattttggataaTGGTAATTGGGCAACCAAATTACCGCGGTCACCATAATAAATGTTTGTATAgcaaaaaatgtataatttttttgGTAGATttacattttctcctctcctccagactgcatgtgctgccatagaaatataatgaatagaacaggcATCCCAATTCAAGTAAAttatggcataatgggtggagTGGTGGCTATTGACAGTGTACCCATAGTTTAAAAGCAGGAAGTAATTTGTGCTGCGATTTGATTCAATCAACTCacattacaaaaaaatacattgcaTGAGCTACATTAgttaacattctacattaccatggaaattaCATCACAATATCAGGCAGCCATTGCAAGTGTATCTACAAATTTACCAGTCAAATTACCAAGATTAGATTTTCCTAGactgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421438 lncRNA upstream 9305 14901565 ~ 14916666 (+) True dolk
TU421538 lncRNA upstream 108987 14816759 ~ 14816984 (+) True G370913
TU421527 lncRNA upstream 127154 14798616 ~ 14798817 (+) False LOC118964542
TU421521 lncRNA upstream 132787 14791739 ~ 14793184 (+) True LOC110523276
TU421520 lncRNA upstream 140722 14784948 ~ 14785249 (+) True G370898
TU421459 lncRNA downstream 92 14930918 ~ 14931459 (+) True G370844
TU421467 lncRNA downstream 9146 14939972 ~ 14940348 (+) True G370852
TU421573 lncRNA downstream 11865 14942691 ~ 14942915 (+) True G370948
TU421576 lncRNA downstream 16073 14946899 ~ 14947168 (+) True G370951
TU421581 lncRNA downstream 17706 14948532 ~ 14948785 (+) True G370953
XM_021601856.2 mRNA upstream 9293 14912515 ~ 14916678 (+) False dolk
XM_036976876.1 mRNA upstream 33777 14819309 ~ 14892194 (+) False cdk5rap2
XM_021601874.2 mRNA downstream 64422 14995248 ~ 14999436 (+) True dnlz
XM_036976890.1 mRNA downstream 76964 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA downstream 76964 15007790 ~ 15014612 (+) True LOC110518391
XM_036976889.1 mRNA downstream 96977 15027803 ~ 15034589 (+) True LOC110523290
XM_036976895.1 mRNA downstream 116913 15047739 ~ 15054353 (+) False LOC110519479
TU421530 other upstream 120500 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 557810 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 600076 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 666838 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1156675 13765247 ~ 13769296 (+) True G369763
TU421788 other downstream 117352 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 193464 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 860733 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1288780 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1804816 16735642 ~ 16738500 (+) True G372373

Expression Profile