RNA id: TU421573



Basic Information


Item Value
RNA id TU421573
length 225
lncRNA type intronic
GC content 0.51
exon number 1
gene id G370948
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14942691 ~ 14942915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atctccacagaggaagtctggagctctgtcagagagaccatcggattcttggtcacctccctgaacaaggcccttctcccccgattgcttagtttggccgggcggccagctctaggaagagtcttggtggttccaaacttcttcaattgaagaataatggaggccactgttcttggggaccttcaatgctgcagaaatgttttggtacccttccaaagatctgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU421467 lncRNA upstream 2343 14939972 ~ 14940348 (+) True G370852
TU421459 lncRNA upstream 11232 14930918 ~ 14931459 (+) True G370844
TU421456 lncRNA upstream 11865 14925971 ~ 14930826 (+) True G370841
TU421438 lncRNA upstream 26025 14901565 ~ 14916666 (+) True dolk
TU421538 lncRNA upstream 125707 14816759 ~ 14816984 (+) True G370913
TU421576 lncRNA downstream 3984 14946899 ~ 14947168 (+) True G370951
TU421581 lncRNA downstream 5617 14948532 ~ 14948785 (+) True G370953
TU421587 lncRNA downstream 14937 14957852 ~ 14958072 (+) True G370959
TU421589 lncRNA downstream 15596 14958511 ~ 14958742 (+) True G370961
TU421750 lncRNA downstream 16323 14959238 ~ 14959495 (+) True G371094
XM_021601856.2 mRNA upstream 26013 14912515 ~ 14916678 (+) False dolk
XM_036976878.1 mRNA upstream 50497 14819309 ~ 14892194 (+) False cdk5rap2
XM_021601874.2 mRNA downstream 52333 14995248 ~ 14999436 (+) True dnlz
XM_036976890.1 mRNA downstream 64875 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA downstream 64875 15007790 ~ 15014612 (+) True LOC110518391
XM_036976889.1 mRNA downstream 84888 15027803 ~ 15034589 (+) True LOC110523290
XM_036976895.1 mRNA downstream 104824 15047739 ~ 15054353 (+) False LOC110519479
TU421530 other upstream 137220 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 574530 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 616796 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 683558 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1173395 13765247 ~ 13769296 (+) True G369763
TU421788 other downstream 105263 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 181375 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 848644 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1276691 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1792727 16735642 ~ 16738500 (+) True G372373

Expression Profile