RNA id: TU421767


Basic Information

Item Value
RNA id TU421767
length 310
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G371111
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14971481 ~ 14971790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctaaccgatcgctgcagctgtacatagtctatcagtAAATAGCCCGCCcctttttacctacctcatccccatactgtttttatttatttacttttctgctattttgcacaccagtatctctacatgaccatctgatcatttatcactccagtgttaatctgcaaaattgtaattattcgcctacctccttatgccttttgcacacaatgtatatagactatcctttttttctactatgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgttcacactgctatgctttatctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421757 lncRNA upstream 8550 14962632 ~ 14962931 (+) True G371101
TU421750 lncRNA upstream 11986 14959238 ~ 14959495 (+) True G371094
TU421589 lncRNA upstream 12739 14958511 ~ 14958742 (+) True G370961
TU421587 lncRNA upstream 13409 14957852 ~ 14958072 (+) True G370959
TU421581 lncRNA upstream 22696 14948532 ~ 14948785 (+) True G370953
TU421769 lncRNA downstream 939 14972729 ~ 14973074 (+) True G371113
TU421816 lncRNA downstream 39026 15010816 ~ 15050936 (+) True G371158
TU421817 lncRNA downstream 44031 15015821 ~ 15056218 (+) True G371159
TU421834 lncRNA downstream 95235 15067025 ~ 15088540 (+) True G371170
TU421793 lncRNA downstream 103245 15075035 ~ 15075700 (+) True LOC110518158
XM_021601856.2 mRNA upstream 54803 14912515 ~ 14916678 (+) False dolk
XM_036976878.1 mRNA upstream 79287 14819309 ~ 14892194 (+) False cdk5rap2
XM_021601874.2 mRNA downstream 23458 14995248 ~ 14999436 (+) True dnlz
XM_036976890.1 mRNA downstream 36000 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA downstream 36000 15007790 ~ 15014612 (+) True LOC110518391
XM_036976889.1 mRNA downstream 56013 15027803 ~ 15034589 (+) True LOC110523290
XM_036976895.1 mRNA downstream 75949 15047739 ~ 15054353 (+) False LOC110519479
TU421530 other upstream 166010 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 603320 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 645586 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 712348 14255803 ~ 14259133 (+) True G370360
TU420256 other upstream 1202185 13765247 ~ 13769296 (+) True G369763
TU421788 other downstream 76388 15048178 ~ 15053556 (+) True LOC110519479
TU421847 other downstream 152500 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 819769 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1247816 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1763852 16735642 ~ 16738500 (+) True G372373

Expression Profile