RNA id: TU421835


Basic Information

Item Value
RNA id TU421835
length 1473
lncRNA type read_through
GC content 0.41
exon number 2
gene id G371171
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15077707 ~ 15100378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGAAGAGGCTGATGCTTACAATTCATTTTTATTGTAAAGTTGTATGATATAAAGCAGAAAGAATTAACATCCAAAGGCCCATTTAGGGCCATGGCAAACTGCCTATCATagaccctctccctcttcctccatggTGTCCTCCAGAAGCTCATGAAAGCAATGCTGTCAATCCACATGGAAGCAGAACATAGAGTGCTCCTGTAAAACAATTATTCCGTCAGGAATTAATCAAACAGTCATTGAACGAATGGGATTCACAGTAATACAATTTGTCTGAGAAATGTCAATCATGAACCCCAGTTGTGGAGCCCCTATCCTCTCATCACAAGCCCAAGCACTTACCTCACCTGCTCTTCTGTGTTTTCCtcttcctgcctccctccctttcatCCTTTCCTATTGATGCTTCAACAGATAAAGAGACCTCATATGCCACAATCTGTTTCGGGAAAAAACATCTGAAAGCCCACTCACTTGAGGTGAATAATCACATGAGATCAGGAATTGTAGTGGTTGGGTTGAAAGACATTACCTAAACATACTTCTATCAACACTAATACAGTTGTCTACAGAGAACAGGCTTTGATAGTAAACACTTACCTAATGAAGTCATCCAGCTGtgctcctcctccaaccctcccaTCCTTTCCAATTGATGCTTCAACAGATATGTTTCTTTGGCTGCTCTTTTCATCTATCTCAGACTTGAACAGGCTTAGAAAGAGGACAAAAGGAAGCCAAAGCAACTTTAAAAGAGAAGTAGAAGAGGCAGACTTCTTTTCTTTTTGACGTCTGTTGGCTATTTTTCCTGTGCTCTTGGTCTTCTCCTTTTCTGCTAATCCTTAGTTATTTAAATAGTTATTTTGGCCATATGTCCATCAGAATTCTAGTTCAATCTCCTCTCTATTACTCTTCTAAAGTGTTTTCACCTCTTTTCTCTGGGTCTCTGTTTATCTTGCCTCCCCCTTGTGTTTTCCATAACTTTCTTTCGATCCACTCAGCTCTTCTTTACTGCTAATCTCATTTACCTTTTATCCCATGGTCCTTCCTGATTCTGTCCATCAGAACTTGAATTCTATATCTCCTACTTCCCTCCTGATAAACCACTCtggtctctcttcctcctctctcatgtttcctcctcttcaccctcatgCCTGGCTTCCTTATAATTTGTTCCTCCTTTTActtattttctcatttttttgtttgttttttctcttAAAAAAACTATTGTTTATTTACATCTATCAACATACCTAGGAGCATTGACTTGTACATTTCTTCTTTTGTCTGCTCCCTTTCTTTTGTCATCTACTGAAAAGTTGTCGATGCCTCGTCCGCCGCTTTCTTCTGCTTCTTCCTTGTTCTCCTCTTTGCAGACTGTGCGTGAGCGGTCTCTGGacgctgctctctctcttccctccgcACAGAGGCGTCAGATGTAGACGCTGTGACCTCGTATGCCAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421793 lncRNA upstream 2007 15075035 ~ 15075700 (+) True LOC110518158
TU421817 lncRNA upstream 21489 15015821 ~ 15056218 (+) True G371159
TU421816 lncRNA upstream 26771 15010816 ~ 15050936 (+) True G371158
TU421769 lncRNA upstream 104633 14972729 ~ 14973074 (+) True G371113
TU421767 lncRNA upstream 105917 14971481 ~ 14971790 (+) True G371111
TU421776 lncRNA downstream 16820 15117198 ~ 15187954 (+) True uck1
TU421874 lncRNA downstream 92571 15192949 ~ 15193278 (+) True G371206
TU422064 lncRNA downstream 155724 15256102 ~ 15256318 (+) True G371367
TU422121 lncRNA downstream 246750 15347128 ~ 15347847 (+) True G371420
TU422153 lncRNA downstream 318115 15418493 ~ 15418732 (+) True G371452
XM_036976894.1 mRNA upstream 2149 15065627 ~ 15075558 (+) False LOC110518158
XM_036976895.1 mRNA upstream 23354 15047739 ~ 15054353 (+) False LOC110519479
XM_036976889.1 mRNA upstream 43118 15027803 ~ 15034589 (+) True LOC110523290
XM_036976890.1 mRNA upstream 63095 15007790 ~ 15014612 (+) False LOC110518391
XM_036976891.1 mRNA upstream 63095 15007790 ~ 15014612 (+) True LOC110518391
XM_036976892.1 mRNA downstream 16846 15117224 ~ 15145520 (+) False uck1
XM_021601872.2 mRNA downstream 38263 15138641 ~ 15145520 (+) False uck1
XM_036976911.1 mRNA downstream 364177 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA downstream 364331 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA downstream 364331 15464709 ~ 15591443 (+) True LOC110523300
TU421788 other upstream 24151 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 272236 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 709546 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 751812 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 818574 14255803 ~ 14259133 (+) True G370360
TU421847 other downstream 23912 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 691181 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1119228 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1635264 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1770056 16870434 ~ 16882185 (+) False G372618

Expression Profile