RNA id: TU421837


Basic Information

Item Value
RNA id TU421837
length 438
lncRNA type read_through
GC content 0.47
exon number 2
gene id G371172
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15080692 ~ 15102326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTGGGATGGGACAGCAAATCGGTGTGAAGCGTGTGGGTGTGACGTCTTGGACGGAGAATGAGGCCATTTATCAGGGGAGGTGCAGCTCTGTGTGTCCAGAGGGGGAAAGATTGAGTGTTTCTTAGGTGGGTCCTTCTGGGTGCCGGCAGCATGCTGGTCAGGCTCcgattggctgttggcgaggtacCTGTGGTGGTTGTACCAGGGGAAAGCTGGCAGTGTCGGGGAGACGGGACAAATAATGGAAGAGGTGGAGCGCTGCTTGATCACCCCTTTATCCACCCCAATCTGTATGATGACAGACACACTTTTATTACTTAATAGCTTGAtggttattgttattactatCTTAAAACAATTACATGTGTATGGGTAATAAATATCATAGAGAAAACACGTTTTATTACTGTATATTAGCCTATTAGGAAAATGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421793 lncRNA upstream 4992 15075035 ~ 15075700 (+) True LOC110518158
TU421817 lncRNA upstream 24474 15015821 ~ 15056218 (+) True G371159
TU421816 lncRNA upstream 29756 15010816 ~ 15050936 (+) True G371158
TU421769 lncRNA upstream 107618 14972729 ~ 14973074 (+) True G371113
TU421767 lncRNA upstream 108902 14971481 ~ 14971790 (+) True G371111
TU421776 lncRNA downstream 14872 15117198 ~ 15187954 (+) True uck1
TU421874 lncRNA downstream 90623 15192949 ~ 15193278 (+) True G371206
TU422064 lncRNA downstream 153776 15256102 ~ 15256318 (+) True G371367
TU422121 lncRNA downstream 244802 15347128 ~ 15347847 (+) True G371420
TU422153 lncRNA downstream 316167 15418493 ~ 15418732 (+) True G371452
XM_036976894.1 mRNA upstream 5134 15065627 ~ 15075558 (+) False LOC110518158
XM_036976895.1 mRNA upstream 26339 15047739 ~ 15054353 (+) False LOC110519479
XM_036976889.1 mRNA upstream 46103 15027803 ~ 15034589 (+) True LOC110523290
XM_036976890.1 mRNA upstream 66080 15007790 ~ 15014612 (+) False LOC110518391
XM_036976892.1 mRNA downstream 14898 15117224 ~ 15145520 (+) False uck1
XM_021601872.2 mRNA downstream 36315 15138641 ~ 15145520 (+) False uck1
XM_036976911.1 mRNA downstream 362229 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA downstream 362383 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA downstream 362383 15464709 ~ 15591443 (+) True LOC110523300
TU421788 other upstream 27136 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 275221 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 712531 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 754797 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 821559 14255803 ~ 14259133 (+) True G370360
TU421847 other downstream 21964 15124290 ~ 15128817 (+) True G371182
TU422347 other downstream 689233 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1117280 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1633316 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1768108 16870434 ~ 16882185 (+) False G372618

Expression Profile