RNA id: TU421797


Basic Information

Item Value
RNA id TU421797
length 397
lncRNA type read_through
GC content 0.54
exon number 3
gene id G371139
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15090967 ~ 15150407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatcccagtttagcagagtAGTCATTTTAAACCAGTCTTTTCCTCCAACCTACTGTATGTGCTCTGGTCCGGCCCTAGTCAGTCACTCTTCCCAAGTTAGTTAGGTCCAACTGAttgtgtccatccatccatctatcccgtccgtctgtctgtctgaatgtctgtCCATAGTAAAGTGGAGTTAGTGTCTGTAACACAGTGGAGGTCCCTTGGCGGGACCTGTTCCCGGGTTTGGGCACCACGCCGTGCCCCTACACCCCCTAGGTCTTCTCTTCGCGCTCTGTCCGCCTCCGGGTGATGTTTCGAGGCTTGATCTTCAGTGAGAGCTCCCACAGCGCCTCCTCGGCCAGGTGGTCGCTGAAGTCGTTGAAGAAGCACACAATGTCGTCGTTGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU421834 lncRNA upstream 2427 15067025 ~ 15088540 (+) True G371170
TU421793 lncRNA upstream 15267 15075035 ~ 15075700 (+) True LOC110518158
TU421817 lncRNA upstream 34749 15015821 ~ 15056218 (+) True G371159
TU421816 lncRNA upstream 40031 15010816 ~ 15050936 (+) True G371158
TU421769 lncRNA upstream 117893 14972729 ~ 14973074 (+) True G371113
TU421874 lncRNA downstream 42542 15192949 ~ 15193278 (+) True G371206
TU422064 lncRNA downstream 105695 15256102 ~ 15256318 (+) True G371367
TU422121 lncRNA downstream 196721 15347128 ~ 15347847 (+) True G371420
TU422153 lncRNA downstream 268086 15418493 ~ 15418732 (+) True G371452
TU422154 lncRNA downstream 268570 15418977 ~ 15419301 (+) True G371453
XM_036976894.1 mRNA upstream 15409 15065627 ~ 15075558 (+) False LOC110518158
XM_036976895.1 mRNA upstream 36614 15047739 ~ 15054353 (+) False LOC110519479
XM_036976889.1 mRNA upstream 56378 15027803 ~ 15034589 (+) True LOC110523290
XM_036976890.1 mRNA upstream 76355 15007790 ~ 15014612 (+) False LOC110518391
XM_036976911.1 mRNA downstream 314148 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA downstream 314302 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA downstream 314302 15464709 ~ 15591443 (+) True LOC110523300
XM_036976915.1 mRNA downstream 599784 15750191 ~ 15756122 (+) False st6galnac4
XM_021601899.2 mRNA downstream 602497 15752904 ~ 15756190 (+) False st6galnac4
TU421788 other upstream 37411 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 285496 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 722806 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 765072 14321104 ~ 14325895 (+) True G370382
TU420927 other upstream 831834 14255803 ~ 14259133 (+) True G370360
TU422347 other downstream 641152 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 1069199 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1585235 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1720027 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1720027 16870434 ~ 16882185 (+) True G372618

Expression Profile