RNA id: TU422155


Basic Information

Item Value
RNA id TU422155
length 301
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G371454
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 15421280 ~ 15421580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattagacaaacatatcagtcaaacatatcagtcaaacatgttagtcaaacatattagtcaaacatgttagtcaaacatattagtcaaacatatcagtCAAACATATCAGTCAAACATGTTAGTCAAACATATCAGTCAAACATGTTAGTCAAACATGTTACTCAAACATatcagtcaaacatattagtcaaacatgttAGTCAAACATATCAGTCAAACATGTTAGTCAAACATATCAGTCAAAAATGTTAGTCAAACACATTAGTCAAAcatgttagtcaaacatattagtcaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU422154 lncRNA upstream 1979 15418977 ~ 15419301 (+) True G371453
TU422153 lncRNA upstream 2548 15418493 ~ 15418732 (+) True G371452
TU422121 lncRNA upstream 73433 15347128 ~ 15347847 (+) True G371420
TU422064 lncRNA upstream 164962 15256102 ~ 15256318 (+) True G371367
TU421874 lncRNA upstream 228002 15192949 ~ 15193278 (+) True G371206
TU422205 lncRNA downstream 56793 15478373 ~ 15484989 (+) True G371489
TU422212 lncRNA downstream 68028 15489608 ~ 15490263 (+) True G371495
TU422261 lncRNA downstream 192625 15614205 ~ 15615135 (+) True G371544
TU422292 lncRNA downstream 229398 15650978 ~ 15651436 (+) True G371567
TU422322 lncRNA downstream 266646 15688226 ~ 15688447 (+) True G371597
XM_036976892.1 mRNA upstream 275760 15117224 ~ 15145520 (+) False uck1
XM_021601872.2 mRNA upstream 275760 15138641 ~ 15145520 (+) False uck1
XM_036976887.1 mRNA upstream 324523 15086878 ~ 15096757 (+) True LOC110519478
XM_036976894.1 mRNA upstream 345722 15065627 ~ 15075558 (+) False LOC110518158
XM_036976895.1 mRNA upstream 366927 15047739 ~ 15054353 (+) False LOC110519479
XM_036976911.1 mRNA downstream 42975 15464555 ~ 15591443 (+) False LOC110523300
XM_036976909.1 mRNA downstream 43129 15464709 ~ 15591443 (+) False LOC110523300
XM_036976910.1 mRNA downstream 43129 15464709 ~ 15591443 (+) True LOC110523300
XM_036976915.1 mRNA downstream 328611 15750191 ~ 15756122 (+) False st6galnac4
XM_021601899.2 mRNA downstream 331324 15752904 ~ 15756190 (+) False st6galnac4
TU421847 other upstream 292463 15124290 ~ 15128817 (+) True G371182
TU421788 other upstream 367724 15048178 ~ 15053556 (+) True LOC110519479
TU421530 other upstream 615809 14804661 ~ 14805471 (+) True LOC118964542
TU420985 other upstream 1053119 14367672 ~ 14368161 (+) True G370414
TU420951 other upstream 1095385 14321104 ~ 14325895 (+) True G370382
TU422347 other downstream 369979 15791559 ~ 15795122 (+) False G371615
TU423147 other downstream 798026 16219606 ~ 16220933 (+) True G372281
TU423245 other downstream 1314062 16735642 ~ 16738500 (+) True G372373
TU423600 other downstream 1448854 16870434 ~ 16882185 (+) False G372618
TU423601 other downstream 1448854 16870434 ~ 16882185 (+) True G372618

Expression Profile